Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • News & Views
  • Published:

Protein engineering

Accelerating protein sensor optimization with machine learning

A recent study introduces a machine learning approach to investigate the effects of mutations on protein sensors commonly employed in fluorescence microscopy, thus enabling the discovery of high-performance sensors.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Machine-learning-based optimization of calcium sensor performance.

References

  1. Nakai, J., Ohkura, M. & Imoto, K. Nat. Biotechnol. 19, 137–141 (2001).

    Article  Google Scholar 

  2. Tian, L. et al. Nat. Methods 6, 875–881 (2009).

    Article  Google Scholar 

  3. Jasper, A. et al. J. Neurosci. 32, 13819 (2012).

    Article  Google Scholar 

  4. Ohkura, M. et al. PLoS ONE 7, e51286 (2012).

    Article  Google Scholar 

  5. Chen, T.-W. et al. Nature 499, 295–300 (2013).

    Article  Google Scholar 

  6. Dana, H. et al. Nat. Methods 16, 649–657 (2019).

    Article  Google Scholar 

  7. Inoue, M. et al. Cell 177, 1346–1360.e1324 (2019).

    Article  Google Scholar 

  8. Zhang, Y. et al. Nature 615, 884–891 (2023).

    Article  Google Scholar 

  9. Wait, S. J. et al. Nat. Comput. Sci. https://doi.org/10.1038/s43588-024-00611-w (2024).

    Article  Google Scholar 

  10. Wardill, T. J. et al. PLoS ONE 8, e77728 (2013).

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hod Dana.

Ethics declarations

Competing interests

The author declares no competing interests.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Dana, H. Accelerating protein sensor optimization with machine learning. Nat Comput Sci 4, 165–166 (2024). https://doi.org/10.1038/s43588-024-00612-9

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s43588-024-00612-9

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing