Skip to main content

Thank you for visiting You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Orbital-selective spin excitation of a magnetic porphyrin


Scattering of electrons by localized spins is the ultimate process enabling detection and control of the magnetic state of a spin-doped material. At the molecular scale, scattering is mediated by the orbitals hosting the spin. Here we report the selective excitation of a molecular spin by tunneling through different molecular orbitals. Spatially resolved tunneling spectra on iron-porphyrins reveal that the inelastic spin excitation extends beyond the iron site, changing shape and symmetry along the molecule. Combining density functional theory simulations with a phenomenological scattering model, we show that the extension and lineshape of the inelastic signal are due to excitation pathways assisted by different frontier orbitals. By selecting the intramolecular site for electron injection, the relative weight of iron and pyrrole orbitals in the tunneling process is modified. Thus, the excitation mechanism, reflected by its spectral lineshape, depends on the degree of localization and energy alignment of the chosen molecular orbital.


Organic spintronics has accomplished such a level of development in the recent years that has been labeled as an emerging technology1,2,3,4,5,6. Its realization depends on the efficient interaction of electron currents with spins of a magnetic organic material. The spin density of an organometallic molecule is generally localized at the spin-doping metal ion, but it can be accessed through its organic ligand environment. For instance, the molecular spin can be manipulated by distortions of the molecular structure7,8,9,10,11,12,13,14, or by tuning the molecular interaction with the local environment15,16,17,18,19,20.

In most organometallic species, the spin of the metallic ion is distributed among several spin-polarized atomic orbitals. The organic ligands around cast an anisotropic field that breaks the orbital degeneracy and induces a preferential spin orientation. The split spin-hosting orbitals extend and mix differently with molecular states and with the surroundings, behaving as different electron channels for scattering with the spin. At the single molecule scale, the existence of several electron-spin scattering channels competing in a molecule has been usually identified indirectly by phenomena, such as the partial Kondo screening of the spin (underscreened Kondo8,19), multi-orbital Kondo screening21, the spatial extension of Kondo spectral features22,23, or by the effect of the molecular spin on superconducting quasiparticles24.

Here we show that a molecular spin can be selectively excited by injecting electrons into two different orbital channels. We investigate the spin excitation of Fe-tetraphenyl porphyrin (FeTPP) molecules adsorbed on a Au(111) surface by scanning tunneling spectroscopy (STS). The spin S = 1 of FeTPP can be excited either by electron tunneling over the Fe ion or over two of the four molecular pyrrole groups. Interestingly, the inelastic spin excitation features show asymmetric components with opposite sign on each site. Asymmetry in the dI/dV spectra of magnetic systems has been typically attributed to Fano interference in a Kondo-screened spin7,25. However, here Kondo screening is absent and we show that the spectral asymmetry is due to the spin-polarized orbital lying out of the particle-hole symmetry point. Then, each spectral shape reveals the alignment and hybridization of the molecular states hosting the molecular spin. With the support of density functional theory (DFT) simulations, we provide an atomistic picture of each tunneling channel based on distinct spin-polarized molecular states with strong Fe character and different distribution within the molecule.


Scanning tunneling microscopy (STM) images show that the porphyrin molecules arrange in close-packed islands on the Au(111) surface (Fig. 1a) and appear with a protrusion at the center (green box in Fig. 1a) that is attributed to the Cl ligand of the intact FeTPP-Cl molecule. A fraction of the molecules exhibits instead two lobes. They correspond to the dechlorinated species FeTPP (Fig. 1b), which adopt a saddle conformation upon adsorption (Fig. 1c). FeTPP molecules can be controllably obtained by removing the Cl ligand from the FeTPP-Cl molecules using tunneling electrons (see Supplementary Fig. 1) or by annealing the substrate10. The dechlorination process changes the Fe oxidation state from Fe+3 to Fe+2 and decreases the total spin from S = 3/2 to S = 110,11,26.

Fig. 1

FeTPP adsorbed on Au(111). a Topographic STM image (7 × 5 nm2) of a close-packed island of FeTPP (red box) and FeTPP-Cl (green box) molecules on Au(111). Imaging conditions: V = 0.25 V, I = 10 pA. b Zoom of a single FeTPP molecule and molecular structure superimposed. c Cross-section of the DFT relaxed structure of the FeTPP on the Au(111) surface (three gold layers) showing the saddle conformation acquired upon adsorption

STS measurements over the molecules reveal steps in conductance at symmetric bias values (Fig. 2a), associated to the onset of inelastic tunneling27,28. While the steps on the FeTPP-Cl molecules appear at VS = ±1.7 mV (shown in Supplementary Note 1), the removal of the Cl ligand rises the excitation energy to VS = ±7.4 mV. In both cases the inelastic spectra show a dependence with the applied magnetic field (see Supplementary Note 2), which agrees with changes of the spin-multiplet of Fe-porphyrin moieties11,24,29. We, thus, associated these steps to spin excitations induced by tunneling electrons, and discard any possible vibrational origin30.

Fig. 2

Spatial distribution of the spin excitation on FeTPP. a Characteristic dI/dV spectra of FeTPP measured over one of the two bright pyrrole groups (blue) and over the central Fe ion (red). As a reference, we add a spectrum acquired over the dark pyrroles with the same tip (dashed gray), showing the complete absence of features in this range. (Setpoint: V = 20 mV, I = 300 pA. Lock-in frequency 938 Hz, modulation 50 μV rms). The insets are 1.7 × 1.7 nm2 constant current dI/dV maps at V = −15 mV and V = +15 mV of the topography image shown as inset in b. b Stacking plot of point dI/dV spectra (40 curves, 2.5 nm) along the axis of a FeTPP molecule (as shown in the inset). c Symmetric (Gs = \(\frac{1}{2}\left( {G_{{\mathrm {V}} > 0} + G_{{\mathrm {V}} < 0}} \right)\)) and antisymmetric (Ga = \(\frac{1}{2}\left( {G_{{\mathrm {V}} > 0} - G_{{\mathrm {V}} < 0}} \right)\)) components of the dI/dV spectra of a and their flattened spatial distribution along the axis of the FeTPP molecule, as in b

We find a striking spatial distribution of the spectroscopic features of the FeTPP species (see Fig. 2a). While the energy position of the inelastic conductance steps remains the same (VS = ±7.4 ± 0.5 mV) all over the molecule, their symmetry varies as we move off-center towards the brighter pyrroles. A stacking plot of point dI/dV spectra across the FeTPP molecule (Fig. 2b) shows inelastic steps with a rather symmetric lineshape over the pyrroles and with strong antisymmetric character over the Fe site. It is remarkable that the energy positions of the conductance steps remain nevertheless constant, indicating that the same excitation is the origin for the inelastic features across the molecule. The spin excitation is only observed along the axis formed by the brighter pyrroles (marked in the inset in Fig. 2b), and is absent over the two other pyrroles (grey dashed line in Fig. 2a).


In a first approximation, the spin excitation energy is determined by the magnetic anisotropy of the molecule on the surface, which can be modeled with a phenomenological spin Hamiltonian (ref. 31, p. 15) \(\hat H_{\mathrm {s}}\) = \(D\hat S_z^2 + E\left( {\hat S_x^2 - \hat S_y^2} \right)\), where \(\hat S_x,\hat S_y,\hat S_z\) are the three components of the spin operator, and D and E the axial and transverse anisotropy parameters, respectively. We find that the inelastic step splits by applying a magnetic field perpendicular to the surface, in accordance with Zeeman shifts of a S = 1 multiplet (see Supplementary Figs. 2 and 3). Hence, the excitation at VS = ±7.4 mV corresponds to a transition from the \(\left| {m_{\mathrm {S}} = 0} \right\rangle\) ground state to the \(\left| {m_{\mathrm {S}} = \pm 1} \right\rangle\) multiplet, and the excitation energy is the axial anisotropy constant D = 7.4 meV (similar to the one reported for FeTPP crystals32). A small fraction of molecules (~15%) exhibit the inelastic step split into two smaller steps even in the absence of magnetic field, at VS = ±8.7 and ±6.5 mV (see Supplementary Note 3 and Supplementary Fig. 4). This is probably due to small distortions of the molecular structure on the surface that causes in these cases a finite component of transverse magnetic anisotropy11.

The above spin-model successfully predicts excitation energies and transition rates31. However, to fully describe the spectral shape of inelastic tunneling processes, spin–electron interactions must be taken into account. Electron scattering mechanisms contributing to the inelastic signal can be described by Hamiltonian terms of the form \(H_{{\mathrm {int}}} \simeq {\cal U} + J \cdot {\bf{s}} \cdot {\bf{S}}\). The exchange term J describes the transfer of energy and angular momentum by electrons (with spin s), and accounts for excitations of the molecular spin S. The potential scattering term \({\cal U}\) reflects charge scattering processes by partially occupied localized states33,34, and its role has typically been disregarded in magnetic systems.

Most of the scattering processes contribute to the tunneling conductance with bias-symmetric components. Asymmetry in the spectra of Kondo systems has been generally attributed to Fano-like interference of the exchange-scattering channel with other tunneling paths35. While in the present case Kondo screening can be excluded due to the large anisotropy, high-order scattering processes still apply. In particular, it has been shown34 that the presence of a potential scattering channel can produce a peculiar bias-asymmetry in the conductance spectra. As we show in the Supplemental Material (see Supplementary Note 4), a finite \({\cal U}\) amplitude leads to antisymmetric components in the dI/dV spectra, arising already at biases below the excitation energy and with small logarithmic peaks/dips at the excitation onset. As a result, the shape of the inelastic features in dI/dV spectra reflects the degree of particle-hole asymmetry of the system (Fig. 3).

Fig. 3

Influence of potential scattering in STS and orbital alignment. a Evolution of the simulated dI/dV spectra with the ratio of potential and exchange scattering amplitudes \(U = \frac{{\cal U}}{J}\)34. b Three representative cases, namely electron-hole symmetry (U = 0) and mix-valence regime (U = ±0.9). c Representation of the single-impurity Anderson model parameters for the three selected cases in b

Following this interpretation, we separate the symmetric Gs and antisymmetric Ga parts of the spectra in Fig. 2a, b as indicated in the caption. The resulting plots (Fig. 2c) reveal that the inelastic fraction in the symmetric component is larger over the pyrrole groups by a factor of 3 (inelastic fraction \(\frac{{{\mathrm{\Delta }}G_{\mathrm {s}}}}{{G_{\mathrm {s}}}}\) amounts to 0.9 and 0.3 over pyrroles and Fe, respectively), while the antisymmetric component Ga has opposite sign on each site, and is two times larger over the Fe ion. Furthermore, the Ga component shows characteristic dips and peaks at the onset of excitation, which resemble the antisymmetric components of higher order terms associated to a nonzero potential scattering amplitude (see Supplementary Note 5 and Supplementary Figs. 5 and 6), rather than other known sources of asymmetry, such as Fano-like interference with other tunneling channels.

We thus fitted the dI/dV spectra of Fig. 2a using a (second-order scattering) phenomenological model developed by Ternes34 (for fit results see Supplementary Fig. 5 and Supplementary Table 1). The stronger antisymmetric component of the curve taken over the Fe ion is reproduced using a large and positive ratio between potential and exchange-scattering amplitudes, i.e., \(U = {\cal U}{\mathrm{/}}J = 0.8\), whereas the opposite and weaker antisymmetric component of the curve taken on the pyrroles is due to a smaller and negative ratio, U = −0.4. In Fig. 3a we show the evolution of the asymmetry in the spectra as we sweep the parameter U (see Eq. (3) in Supplementary Information). The inelastic spectra show a characteristic asymmetry that changes sign as we move from the hole (U = 0.9) to the particle (U = −0.9) mix-valence regimes, while at the particle-hole symmetry point the spectra is symmetric. Three cases are individually plotted for clarity in Fig. 3b, resembling the asymmetry found in the experiments.

The microscopic Anderson model33,34,36 provides a physical interpretation for the phenomenological parameter U obtained from the fit to the experimental spectra. As described by the Schrieffer–Wolff transformation33, U depends linearly on the ratio between energy position of the singly occupied spin state and the on-site Coulomb energy \(\epsilon _{\mathrm {d}}\)/Ud. This relation conveys information about the relative alignment of the spin energy levels with respect to the Fermi energy. In Fig. 3c we included the representation of the orbital energy position for the three cases shown in Fig. 3b.

From the fitting of our experimental data for the more symmetric STS lineshape taken on the pyrroles, we obtain \(\epsilon _{\mathrm {d}}\) = −0.7Ud, which can be interpreted as a spin state close to the electron-hole symmetry point (\(\epsilon _{\mathrm {d}}\) = −0.5Ud), where potential scattering would be absent (U = 0). In contrast, from spectra on the Fe site we obtain \(\epsilon _{\mathrm {d}}\) = −0.1Ud, a situation where the spin is close to the mixed-valence regime and the potential scattering is significant. Although both scenarios deviate from the electron-hole symmetry point, on the central Fe ion the situation is extreme and, therefore, the spectra show a larger antisymmetric component. Furthermore, the larger electron-hole symmetry over the pyrrole groups agrees with the larger inelastic fraction over this point37. Even if the Anderson model does not capture the complexity of the spin density distribution of a metal–organic system, it still provides a suitable interpretation for the energy alignment of the orbitals mediating the excitation in terms of electron-hole asymmetry.

The energy alignment of the FeTPP frontier orbitals can be explored in spectra measured in a wider bias range. In consistency with the above-described picture, we find two electronic resonances around the Fermi level, each showing a different linewidth and spatial dependence (Fig. 4a). While a sharp resonance appears at VS = +150 mV on the pyrroles, a broad state is found at negative bias over the Fe site (for a wider bias range see Supplementary Note 6 and Supplementary Fig. 7). The dI/dV stacking plot along the molecular axis (4b) captures these differences, and reveals an orbital pattern similar to that of the spin excitations (Fig. 2b). The dI/dV maps in Fig. 4c further localize the positive and negative frontier orbitals along two of the four pyrroles and over the Fe center, respectively. This agrees with a molecular symmetry breaking, also observed in the spin excitation maps (Fig. 2a). We note that the broad negative bias resonance on the Fe ion crosses through zero bias, revealing a situation close to the mixed-valence regime, in agreement with the outcome of the Anderson model from above.

Fig. 4

Frontier orbitals spatial distribution. a dI/dV spectra of FeTPP measured on the two bright pyrrole groups (blue) and on the central Fe atom (red) (setpoint: V = 0.4 V, I = 300 pA. Lock-in frequency 938 Hz, modulation 2 mV rms). The spectra are measured in a wider range as in Fig. 2a to capture the shape and position of frontier orbitals. b Stacking plot of point dI/dV spectra (40 curves, 2.5 nm) along the FeTPP molecule showing the spatial localization of dI/dV signal along the axis determined by the two bright pyrroles. c Constant height conductance maps at the energy of the resonances observed in a

In order to identify the orbital character of the frontier spectral features of FeTPP on Au(111), we analyzed its electronic configuration and spin state by means of DFT simulations based on the SIESTA code38. We find that adding a Hubbard-like term with Ud = 2 eV to describe the Coulomb interactions between electrons in the Fe 3d shell is crucial to reproduce the orbital alignment around EF observed in the experiment39. For the free-standing molecule, our results confirm the well-known multi-configurational character of the ground state of FeTPP40,41. Correspondingly, we found almost degenerate solutions with quite different fillings of the levels associated with the metallic center and the same total spin. On the Au(111) surface the molecule adopts a distorted saddle configuration, as previously reported for porphyrins on surfaces12. Figure 5a shows the density of states of FeTPP/Au(111) projected on Fe-d orbitals (PDOS). The FeTPP on Au(111) has a magnetic moment of 2.12 μB (S = 1) shared between frontier states, which have strong character on \(d_{z^2}\) and d π orbitals of the Fe ion (see the sketch in Fig. 5b). The d xy and \(d_{x^2 - y^2}\)-derived states are fully occupied and empty, respectively, and largely localized due to their weak interaction with the metal substrate (see Supplementary Note 7 and Supplementary Fig. 8). The \(d_{z^2}\)-derived state has a net spin polarization of 0.75 μB and is quite broadened as a consequence of its large hybridization with the substrate. The d π -derived states appear with a broken degeneracy caused by the saddle-like distortion of the molecular backbone on the substrate. The lowest energy configuration finds d yz orbital with larger spin density, while the d xz is almost completely occupied and, thus, exhibits a substantially smaller spin polarization (see Supplementary Note 8 and Supplementary Fig. 9). Namely, the spin polarization coming from the d π orbitals is dominated by the contribution from d yz . The computed PDOS thus pictures the multi-orbital character of the spin polarization of this system.

Fig. 5

DFT simulations of the molecular orbitals energy alignment and spatial distribution. a Spin-polarized DOS of the FeTPP/Au(111) system projected on Fe d xz , d yz , and \(d_{z^2}\) orbitals (dashed/solid lines represent majority/minority spin states). b Simplified scheme describing the occupation of Fe 3d levels for the adsorbed FeTPP (red/blue arrows indicate majority/minority spin states). The partial color filling of the d π multiplet represents the distribution of their net spin 1/2 polarization obtained from DFT, which is essentially localized in the d yz orbital; the total molecular spin is S = 1. c Total DOS of the FeTPP/Au(111) system projected on Fe states and on C and N states of the upper-pyrrole moieties. d Spin polarization isosurface obtained for the FeTPP/Au(111) system by subtracting occupied states with spin up and down (red/green describe spin density isosurfaces); upper pyrroles are at the top and bottom of the structure; the Au(111) surface has been omitted from the plot for clarity)

The spatial spin excitation pattern observed in the experiment is a consequence of different molecular states involved in the tunneling through the molecule. In Fig. 5c, we compare the PDOS on Fe orbitals and on the upper-pyrrole groups (bright pyrroles). The former resemble the dI/dV spectrum at the center of the molecule (Fig. 4a) with larger DOS at the negative part of the energy spectrum plus some weight above EF. This proves that the tunneling transmission on the Fe ion is governed by Fe d-resonances. The larger overlap of this Fe-d manifold with EF, closer to a mixed-valence configuration, is the main cause of the larger asymmetry of the spin-excitation features observed over the Fe site. In contrast, the PDOS on the upper-pyrrole atoms exhibit only a resonance at positive energy, which correlates with the dI/dV peak measured over the protruding pyrrole groups (Fig. 4a). The resonance is composed of pyrrole states and empty d yz components of the Fe ion, having a strong hybrid Fe-ligand character. As a consequence, this resonance becomes weakly spin-polarized (Fig. 5d). The absence of spin excitation over the lower pyrroles agrees with the lack of spin polarization of the hybrid ligand-d xz states. Therefore, tunneling through pyrrole-Fe hybrid states can effectively excite the spin of the Fe ion19, whereas the smaller overlap of the d yz resonance with EF agrees with the more symmetric excitation lineshape observed in the experiment.

In summary, we have demonstrated that the spin excitation of a S = 1 metal–organic molecule can be selectively excited through two different inelastic tunneling channels. Every channel is mediated by a molecular state with different spatial extension and produces inelastic features with a characteristic asymmetry. We have shown that the asymmetry is a consequence of the spin-polarized molecular state being out of the particle-hole symmetric case. Thus, interpretation of the inelastic spectra in terms of a phenomenological scattering model can be used to detect the alignment of spin-hosting states in molecular magnets and to infer their proximity to a mix-valence configuration.


Our experiments were performed in a low temperature STM with a base temperature of 1.2 K under ultra high vacuum (UHV) conditions (JT-STM by SPECS GmbH). We thermally sublimated 5, 10, 15, 20-tetraphenyl-porphine iron(III) chloride (FeTPP-Cl) molecules on the clean Au(111) substrate at room temperature. Differential conductance (dI/dV) measurements were acquired using lock-in amplifier technique. Analysis of STM and STS data was performed with the WSxM42 and SpectraFox43 software packages.

Ab initio DFT calculations were carried out using the generalized gradient approximation (GGA) with the Hubbard-like Ud correction as proposed by Dudarev44 and as implemented in the 4.1 version of SIESTA code38. The optB88-vdW45 version of the nonlocal van der Waals potential is included to describe the exchange-correlation. For the description of the molecules on the substrate we considered a supercell made up of a three layer Au(111) slab, with a FeTPP molecule placed at its most stable adsorption site on the surface. The basis set consisted on double-ζ plus polarization orbitals with an energy shift of 0.011 Ry for all the atomic species. An energy cut-off of 200 Ry for the real-space grid integrations and 3 × 3 × 1 k-point sampling were considered. The atoms on the topmost Au layer and the molecule were relaxed, until forces were smaller than 0.05 eV/Å.

Data availability

The data that support the findings of this study are available from the corresponding authors upon request.


  1. 1.

    Joachim, C., Gimzewski, J. K. & Aviram, A. Electronics using hybrid-molecular and mono-molecular devices. Nature 408, 541–548 (2000).

    ADS  Article  Google Scholar 

  2. 2.

    Wolf, S. A. Spintronics: a spin-based electronics vision for the future. Science 294, 1488–1495 (2001).

    ADS  Article  Google Scholar 

  3. 3.

    Bogani, L. & Wernsdorfer, W. Molecular spintronics using single-molecule magnets. Nat. Mater. 7, 179–186 (2008).

    ADS  Article  Google Scholar 

  4. 4.

    Schmaus, S. et al. Giant magnetoresistance through a single molecule. Nat. Nanotechnol. 6, 185–189 (2011).

    ADS  Article  Google Scholar 

  5. 5.

    Dediu, V. A., Hueso, L. E., Bergenti, I. & Taliani, C. Spin routes in organic semiconductors. Nat. Mater. 8, 707–716 (2009).

    ADS  Article  Google Scholar 

  6. 6.

    Sun, X. et al. A molecular spin-photovoltaic device. Science 357, 677–680 (2017).

    ADS  Article  Google Scholar 

  7. 7.

    Iancu, V., Deshpande, A. & Hla, S.-W. Manipulating Kondo temperature via single molecule switching. Nano. Lett. 6, 820–823 (2006).

    ADS  Article  Google Scholar 

  8. 8.

    Parks, J. J. et al. Mechanical control of spin states in spin-1 molecules and the underscreened Kondo effect. Science 328, 1370–1373 (2010).

    ADS  Article  Google Scholar 

  9. 9.

    Komeda, T. et al. Observation and electric current control of a local spin in a single-molecule magnet. Nat. Commun. 2, 217 (2011).

    Article  Google Scholar 

  10. 10.

    Heinrich, B. W. et al. Change of the magnetic coupling of a metal–organic complex with the substrate by a stepwise ligand reaction. Nano. Lett. 13, 4840–4843 (2013).

    ADS  Article  Google Scholar 

  11. 11.

    Heinrich, B. W., Braun, L., Pascual, J. I. & Franke, K. J. Tuning the magnetic anisotropy of single molecules. Nano. Lett. 15, 4024–4028 (2015).

    ADS  Article  Google Scholar 

  12. 12.

    Auwärter, W., Écija, D., Klappenberger, F. & Barth, J. V. Porphyrins at interfaces. Nat. Chem. 7, 105–120 (2015).

    Article  Google Scholar 

  13. 13.

    Kuang, G. et al. Mechanically-controlled reversible spin crossover of single Fe-porphyrin molecules. ACS Nano 11, 6295–6300 (2017).

    Article  Google Scholar 

  14. 14.

    Karan, S. et al. Spin control induced by molecular charging in a transport junction. Nano. Lett. 18, 88–93 (2018).

    ADS  Article  Google Scholar 

  15. 15.

    Zhao, A. et al. Controlling the Kondo effect of an adsorbed magnetic ion through its chemical bonding. Science 309, 1542–1544 (2005).

    ADS  Article  Google Scholar 

  16. 16.

    Iancu, V., Deshpande, A. & Hla, S. W. Manipulation of the Kondo effect via two-dimensional molecular assembly. Phys. Rev. Lett. 97, 266603 (2006).

    ADS  Article  Google Scholar 

  17. 17.

    Zhao, A. et al. Kondo effect in single cobalt phthalocyanine molecules adsorbed on Au(111) monoatomic steps. J. Chem. Phys. 128, 234705 (2008).

    ADS  Article  Google Scholar 

  18. 18.

    Franke, K. J., Schulze, G. & Pascual, J. I. Competition of superconducting phenomena and Kondo screening at the nanoscale. Science 332, 940–944 (2011).

    ADS  Article  Google Scholar 

  19. 19.

    Stróżecka, A., Soriano, M., Pascual, J. I. & Palacios, J. J. Reversible change of the spin state in a manganese phthalocyanine by coordination of co molecule. Phys. Rev. Lett. 109, 147202 (2012).

    ADS  Article  Google Scholar 

  20. 20.

    Oberg, J. C. et al. Control of single-spin magnetic anisotropy by exchange coupling. Nat. Nanotechnol. 9, 64–68 (2013).

    ADS  Article  Google Scholar 

  21. 21.

    Pacchioni, G. E. et al. Two-orbital Kondo screening in a self-assembled metal–organic complex. ACS Nano 11, 2675–2681 (2017).

    Article  Google Scholar 

  22. 22.

    Perera, U. G. E. et al. Spatially extended Kondo state in magnetic molecules induced by interfacial charge transfer. Phys. Rev. Lett. 105, 106601 (2010).

    ADS  Article  Google Scholar 

  23. 23.

    Knaak, T. et al. Ligand-induced energy shift and localization of Kondo resonances in cobalt-based complexes on cu(111). Nano. Lett. 17, 7146–7151 (2017).

    ADS  Article  Google Scholar 

  24. 24.

    Heinrich, B. W., Braun, L., Pascual, J. I. & Franke, K. J. Protection of excited spin states by a superconducting energy gap. Nat. Phys. 9, 765–768 (2013).

    Article  Google Scholar 

  25. 25.

    Wang, W. et al. Intramolecularly resolved Kondo resonance of high-spin Fe (II) -porphyrin adsorbed on Au (111). Phys. Rev. B 91, 045440 (2015).

    ADS  Article  Google Scholar 

  26. 26.

    Gopakumar, T. G., Tang, H., Morillo, J. & Berndt, R. Transfer of Cl ligands between adsorbed iron tetraphenylporphyrin molecules. J. Am. Chem. Soc. 134, 11844–11847 (2012).

    Article  Google Scholar 

  27. 27.

    Stipe, B. C., Rezaei, M. A. & Ho, W. Single-molecule vibrational spectroscopy and microscopy. Science 280, 1732–1735 (1998).

    ADS  Article  Google Scholar 

  28. 28.

    Heinrich, A. J., Gupta, J. A., Lutz, C. P. & Eigler, D. M. Single-atom spin-flip spectroscopy. Science 306, 466–469 (2004).

    ADS  Article  Google Scholar 

  29. 29.

    Heinrich, B. W. et al. Change of the magnetic coupling of a metal–organic complex with the substrate by a stepwise ligand reaction. Nano. Lett. 13, 4840–4843 (2013).

    ADS  Article  Google Scholar 

  30. 30.

    Chen, H. et al. Evidence for ultralow-energy vibrations in large organic molecules. Nano. Lett. 17, 4929–4933 (2017).

    ADS  Article  Google Scholar 

  31. 31.

    Gatteschi, D., Sessoli, R. & Villain, J. Molecular Nanomagnets. (Oxford University Press, Oxford, NY, 2006).

    Book  Google Scholar 

  32. 32.

    Boyd, P. D., Buckingham, D. A., McMeeking, R. F. & Mitra, S. Paramagnetic anisotropy, average magnetic susceptibility, and electronic structure of intermediate-spin S = 1 (5, 10, 15, 20-tetraphenylporphyrin) iron (II). Inorg. Chem. 18, 3585–3591 (1979).

    Article  Google Scholar 

  33. 33.

    Schrieffer, J. R. & Wolff, P. A. Relation between the anderson and Kondo hamiltonians. Phys. Rev. 149, 491 (1966).

    ADS  Article  Google Scholar 

  34. 34.

    Ternes, M. Spin excitations and correlations in scanning tunneling spectroscopy. New. J. Phys. 17, 063016 (2015).

    ADS  Article  Google Scholar 

  35. 35.

    Frank, S. & Jacob, D. Orbital signatures of fano-Kondo line shapes in stm adatom spectroscopy. Phys. Rev. B 92, 235127 (2015).

    ADS  Article  Google Scholar 

  36. 36.

    Anderson, P. W. Localized magnetic states in metals. Phys. Rev. 124, 41 (1961).

    ADS  MathSciNet  Article  Google Scholar 

  37. 37.

    Ormaza, M. et al. Efficient spin-flip excitation of a nickelocene molecule. Nano. Lett. 17, 1877–1882 (2017).

    ADS  Article  Google Scholar 

  38. 38.

    Soler, J. M. et al. The siesta method for ab initio order-n materials simulation. J. Phys. Condens. Matter 14, 2745–2779 (2002).

    ADS  Article  Google Scholar 

  39. 39.

    Brumboiu, I. E. et al. Influence of electron correlation on the electronic structure and magnetism of transition-metal phthalocyanines. J. Chem. Theory Comput. 12, 1772–1785 (2016).

    Article  Google Scholar 

  40. 40.

    Vancoillie, S., Zhao, H., Tran, V. T., Hendrickx, M. F. A. & Pierloot, K. Multiconfigurational second-order perturbation theory restricted active space (raspt2) studies on mononuclear first-row transition-metal systems. J. Chem. Theory Comput. 7, 3961–3977 (2011).

    Article  Google Scholar 

  41. 41.

    Liao, M.-S., Watts, J. D. & Huang, M.-J. Electronic structure of some substituted iron(ii) porphyrins. are they intermediate or high spin? J. Phys. Chem. A 111, 5927–5935 (2007).

    Article  Google Scholar 

  42. 42.

    Horcas, I. et al. WSXM: a software for scanning probe microscopy and a tool for nanotechnology. Rev. Sci. Instrum. 78, 013705 (2007).

    ADS  Article  Google Scholar 

  43. 43.

    Ruby, M. Spectrafox: a free open-source data management and analysis tool for scanning probe microscopy and spectroscopy. SoftwareX 5, 31 (2016).

    ADS  Article  Google Scholar 

  44. 44.

    Dudarev, S. L., Botton, G. A., Savrasov, S. Y., Humphreys, C. J. & Sutton, A. P. Electron-energy-loss spectra and the structural stability of nickel oxide: an lsda+u study. Phys. Rev. B 57, 1505–1509 (1998).

    ADS  Article  Google Scholar 

  45. 45.

    Klime, J., Bowler, D. R. & Michaelides, A. Chemical accuracy for the van der waals density functional. J. Phys. Condens. Matter 22, 022201 (2010).

    ADS  Article  Google Scholar 

Download references


We thank Nicolás Lorente and Thomas Frederiksen for stimulating discussions. This work has been funded by the COST 15128 Molecular Spintronics project, by Marie Curie IF ARTE, by the Spanish Ministerio de Economía y Competitividad (MINECO) through the cooperative grant No. MAT2016-78293 and grant No. FIS2016-75862-P, and by the Basque Government (Dep. Industry, Grant PI-2015-1-42, Dep. Education, Grant PI-2016-1-27 and Grant IT-756-13), the EU project PAMS (610446), and the European Regional Development Fund (ERDF).

Author information




C.R.-V., D.-J.C., Z.M., and R.E. carried out the STM measurements. C.R.-V. and M.R.C. did the data analysis and adapted the phenomenological scattering model. A.S., A.G.-L., and D.S.-P. performed the theoretical simulations. C.R.-V., A.S., D.-J.C., Z.M., R.E., M.R.C., M.M.U., A.G.-L., D.S.-P., and J.I.P. discussed the results. C.R.-V., M.R.C., and J.I.P. wrote the paper with input from the other authors.

Corresponding author

Correspondence to Jose Ignacio Pascual.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit

Reprints and Permissions

About this article

Verify currency and authenticity via CrossMark

Cite this article

Rubio-Verdú, C., Sarasola, A., Choi, DJ. et al. Orbital-selective spin excitation of a magnetic porphyrin. Commun Phys 1, 15 (2018).

Download citation

Further reading


By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.


Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing