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Antenna arrangement and energy transfer pathways of a green algal photosystem-I–LHCI supercomplex

Abstract

During oxygenic photosynthesis, photosystems I and II (PSI and PSII) are essential for light-driven electron transport. Excitation energy transfer in PSI occurs extremely quickly, making it an efficient energy converter. In the alga Chlamydomonas reinhardtii (Cr), multiple units of light-harvesting complex I (LHCI) bind to the PSI core and function as peripheral antennae, forming a PSI–LHCI supercomplex. CrPSI–LHCI shows significantly larger antennae compared with plant PSI–LHCI while maintaining highly efficient energy transfer from LHCI to PSI. Here, we report structures of CrPSI–LHCI, solved by cryo-electron microscopy, revealing that up to ten LHCIs are associated with the PSI core. The structures provide detailed information about antenna organization and pigment arrangement within the supercomplexes. Highly populated and closely associated chlorophylls in the antennae explain the high efficiency of light harvesting and excitation energy transfer in CrPSI–LHCI.

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Fig. 1: The C. reinhardtii PSI–8LHCI supercomplex.
Fig. 2: The C. reinhardtii PSI–10LHCI supercomplex.
Fig. 3: Structure of the Lhca proteins in the PSI–8LHCI supercomplex.
Fig. 4: Comparison of Lhca proteins in the PSI–8LHCI supercomplex.
Fig. 5: Plausible energy transfer pathways within LHCI belts or from LHCI to the core in the PSI–8LHCI supercomplex.

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Data availability

The atomic coordinates of the PSI–LHCI supercomplexes have been deposited in the PDB under accession codes 6IJJ (for PSI–8LHCI) and 6IJO (for PSI–10LHCI). The cryo-EM maps of these supercomplexes have been deposited in the EMDB with accession codes EMD-9678 (for PSI–8LHCI) and EMD-9680 (for PSI–10LHCI), respectively. All other data generated or analysed are available from the corresponding authors on reasonable request.

References

  1. Nelson, N. & Ben-Shem, A. The complex architecture of oxygenic photosynthesis. Nat. Rev. Mol. Cell Biol. 5, 971–982 (2004).

    Article  CAS  Google Scholar 

  2. Dekker, J. P. & Boekema, E. J. Supramolecular organization of thylakoid membrane proteins in green plants. Biochim. Biophys. Acta 1706, 12–39 (2005).

    Article  CAS  Google Scholar 

  3. Nelson, N. & Junge, W. Structure and energy transfer in photosystems of oxygenic photosynthesis. Annu. Rev. Biochem. 84, 659–683 (2015).

    Article  CAS  Google Scholar 

  4. Nelson, N. & Yocum, C. F. Structure and function of photosystems I and II. Annu. Rev. Plant. Biol. 57, 521–565 (2006).

    Article  CAS  Google Scholar 

  5. Busch, A. & Hippler, M. The structure and function of eukaryotic photosystem I. Biochim. Biophys. Acta 1807, 864–877 (2011).

    Article  CAS  Google Scholar 

  6. Neilson, J. A. & Durnford, D. G. Structural and functional diversification of the light-harvesting complexes in photosynthetic eukaryotes. Photosynth. Res. 106, 57–71 (2010).

    Article  CAS  Google Scholar 

  7. Le Quiniou, C. et al. PSI-LHCI of Chlamydomonas reinhardtii: increasing the absorption cross section without losing efficiency. Biochim. Biophys. Acta 1847, 458–467 (2015).

    Article  Google Scholar 

  8. Nelson, N. Plant photosystem I—the most efficient nano-photochemical machine. J. Nanosci. Nanotechnol. 9, 1709–1713 (2009).

    Article  CAS  Google Scholar 

  9. Pi, X. et al. Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga. Proc. Natl Acad. Sci. USA 115, 4423–4428 (2018).

    Article  CAS  Google Scholar 

  10. Antoshvili, M., Caspy, I., Hippler, M. & Nelson, N. Structure and function of photosystem I in Cyanidioschyzon merolae. Photosynth. Res. 139, 499–508 (2018).

    Article  Google Scholar 

  11. Mazor, Y., Borovikova, A., Caspy, I. & Nelson, N. Structure of the plant photosystem I supercomplex at 2.6 A resolution. Nat. Plants 3, 17014 (2017).

    Article  CAS  Google Scholar 

  12. Qin, X., Suga, M., Kuang, T. & Shen, J. R. Structural basis for energy transfer pathways in the plant PSI-LHCI supercomplex. Science 348, 989–995 (2015).

    Article  CAS  Google Scholar 

  13. Mozzo, M. et al. Functional analysis of photosystem I light-harvesting complexes (Lhca) gene products of Chlamydomonas reinhardtii. Biochim. Biophys. Acta 1797, 212–221 (2010).

    Article  CAS  Google Scholar 

  14. Jensen, P. E., Haldrup, A., Rosgaard, L. & Scheller, H. V. Molecular dissection of photosystem I in higher plants: topology, structure and function. Physiol. Plant. 119, 313–321 (2003).

    Article  CAS  Google Scholar 

  15. Drop, B. et al. Photosystem I of Chlamydomonas reinhardtii contains nine light-harvesting complexes (Lhca) located on one side of the core. J. Biol. Chem. 286, 44878–44887 (2011).

    Article  CAS  Google Scholar 

  16. Subramanyam, R., Jolley, C., Brune, D. C., Fromme, P. & Webber, A. N. Characterization of a novel photosystem I-LHCI supercomplex isolated from Chlamydomonas reinhardtii under anaerobic (State II) conditions. FEBS Lett. 580, 233–238 (2006).

    Article  CAS  Google Scholar 

  17. Kargul, J., Nield, J. & Barber, J. Three-dimensional reconstruction of a light-harvesting complex I-photosystem I (LHCI-PSI) supercomplex from the green alga Chlamydomonas reinhardtii. Insights into light harvesting for PSI. J. Biol. Chem. 278, 16135–16141 (2003).

    Article  CAS  Google Scholar 

  18. Germano, M. et al. Supramolecular organization of photosystem I and light-harvesting complex I in Chlamydomonas reinhardtii. FEBS Lett. 525, 121–125 (2002).

    Article  CAS  Google Scholar 

  19. Elrad, D. & Grossman, A. R. A genome’s-eye view of the light-harvesting polypeptides of Chlamydomonas reinhardtii. Curr. Genet. 45, 61–75 (2004).

    Article  CAS  Google Scholar 

  20. Stauber, E. J. et al. Proteomics of Chlamydomonas reinhardtii light-harvesting proteins. Eukaryot. Cell 2, 978–994 (2003).

    Article  CAS  Google Scholar 

  21. Stauber, E. J., Busch, A., Naumann, B., Svatos, A. & Hippler, M. Proteotypic profiling of LHCI from Chlamydomonas reinhardtii provides new insights into structure and function of the complex. Proteomics 9, 398–408 (2009).

    Article  CAS  Google Scholar 

  22. Yadavalli, V., Malleda, C. & Subramanyam, R. Protein-protein interactions by molecular modeling and biochemical characterization of PSI-LHCI supercomplexes from Chlamydomonas reinhardtii. Mol. Biosyst. 7, 3143–3151 (2011).

    Article  CAS  Google Scholar 

  23. Ozawa, S. et al. Configuration of ten light-harvesting chlorophyll a/b complex I subunits in Chlamydomonas reinhardtii photosystem I. Plant Physiol. 178, 583–595 (2018).

  24. Pan, X. et al. Structure of the maize photosystem I supercomplex with light-harvesting complexes I and II. Science 360, 1109–1113 (2018).

    Article  CAS  Google Scholar 

  25. Malavath, T., Caspy, I., Netzer-El, S. Y., Klaiman, D. & Nelson, N. Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis. Biochim. Biophys. Acta Bioenerg. 1859, 645–654 (2018).

    Article  CAS  Google Scholar 

  26. Caspy, I. & Nelson, N. Structure of the plant photosystem I. Biochem. Soc. Trans. 46, 285–294 (2018).

    Article  CAS  Google Scholar 

  27. Jordan, P. et al. Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution. Nature 411, 909–917 (2001).

    Article  CAS  Google Scholar 

  28. Vanselow, C., Weber, A. P., Krause, K. & Fromme, P. Genetic analysis of the photosystem I subunits from the red alga, Galdieria sulphuraria. Biochim. Biophys. Acta 1787, 46–59 (2009).

    Article  CAS  Google Scholar 

  29. Takahashi, Y., Yasui, T. A., Stauber, E. J. & Hippler, M. Comparison of the subunit compositions of the PSI-LHCI supercomplex and the LHCI in the green alga Chlamydomonas reinhardtii. Biochemistry 43, 7816–7823 (2004).

    Article  CAS  Google Scholar 

  30. Liu, Z. et al. Crystal structure of spinach major light-harvesting complex at 2.72 A resolution. Nature 428, 287–292 (2004).

    Article  CAS  Google Scholar 

  31. Bonente, G., Pippa, S., Castellano, S., Bassi, R. & Ballottari, M. Acclimation of Chlamydomonas reinhardtii to different growth irradiances. J. Biol. Chem. 287, 5833–5847 (2012).

    Article  CAS  Google Scholar 

  32. Niyogi, K. K., Bjorkman, O. & Grossman, A. R. The roles of specific xanthophylls in photoprotection. Proc. Natl Acad. Sci. USA 94, 14162–14167 (1997).

    Article  CAS  Google Scholar 

  33. Pascal, A. A. et al. Molecular basis of photoprotection and control of photosynthetic light-harvesting. Nature 436, 134–137 (2005).

    Article  CAS  Google Scholar 

  34. Morosinotto, T., Breton, J., Bassi, R. & Croce, R. The nature of a chlorophyll ligand in Lhca proteins determines the far red fluorescence emission typical of photosystem I. J. Biol. Chem. 278, 49223–49229 (2003).

    Article  CAS  Google Scholar 

  35. Steinbeck, J. et al. Structure of a PSI-LHCI-cyt b 6 f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions. Proc. Natl Acad. Sci. USA 115, 10517–10522 (2018).

    Article  CAS  Google Scholar 

  36. Gorman, D. S. & Levine, R. P. Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi. Proc. Natl Acad. Sci. USA 54, 1665–1669 (1965).

    Article  CAS  Google Scholar 

  37. Fischer, N., Setif, P. & Rochaix, J. D. Targeted mutations in the psaC gene of Chlamydomonas reinhardtii: preferential reduction of FB at low temperature is not accompanied by altered electron flow from photosystem I to ferredoxin. Biochemistry 36, 93–102 (1997).

    Article  CAS  Google Scholar 

  38. Chua, N. H. & Bennoun, P. Thylakoid membrane polypeptides of Chlamydomonas reinhardtii: wild-type and mutant strains deficient in photosystem II reaction center. Proc. Natl Acad. Sci. USA 72, 2175–2179 (1975).

    Article  CAS  Google Scholar 

  39. Wei, X. et al. Structure of spinach photosystem II-LHCII supercomplex at 3.2 A resolution. Nature 534, 69–74 (2016).

    Article  CAS  Google Scholar 

  40. Mastronarde, D. N. Automated electron microscope tomography using robust prediction of specimen movements. J. Struct. Biol. 152, 36–51 (2005).

    Article  Google Scholar 

  41. Zhang, J. et al. Structure of phycobilisome from the red alga Griffithsia pacifica. Nature 551, 57–63 (2017).

    Article  Google Scholar 

  42. Grant, T. & Grigorieff, N. Automatic estimation and correction of anisotropic magnification distortion in electron microscopes. J. Struct. Biol. 192, 204–208 (2015).

    Article  Google Scholar 

  43. Rohou, A. & Grigorieff, N. CTFFIND4: fast and accurate defocus estimation from electron micrographs. J. Struct. Biol. 192, 216–221 (2015).

    Article  Google Scholar 

  44. Kimanius, D., Forsberg, B. O., Scheres, S.H. & Lindahl, E. Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2. eLife 5, e18722 (2016).

    Article  Google Scholar 

  45. Zhu, D. et al. Pushing the resolution limit by correcting the Ewald sphere effect in single-particle cryo-EM reconstructions. Nat. Commun. 9, 1552 (2018).

    Article  Google Scholar 

  46. Kucukelbir, A., Sigworth, F. J. & Tagare, H. D. Quantifying the local resolution of cryo-EM density maps. Nat. Methods 11, 63–65 (2014).

    Article  CAS  Google Scholar 

  47. Pettersen, E. F. et al. UCSF Chimera—a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004).

    Article  CAS  Google Scholar 

  48. Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D67, 235–242 (2011).

    Google Scholar 

  49. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D66, 486–501 (2010).

    Google Scholar 

  50. Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D66, 213–221 (2010).

    Google Scholar 

  51. Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D66, 12–21 (2010).

    Google Scholar 

  52. Robert, X. & Gouet, P. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res. 42, W320–W324 (2014).

    Article  CAS  Google Scholar 

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Acknowledgements

Cryo-EM data collection was carried out at the Center for Biological Imaging, Core Facilities for Protein Science at the Institute of Biophysics, Chinese Academy of Sciences. We thank W. Yang from the Institute of Botany, Chinese Academy of Sciences, for providing the C. reinhardtii CC-124 strain; B. Zhu, X. Huang, G. Ji, D. Fan, T. Niu, F. Sun and other staff members at the Center for Biological Imaging for their support in data collection; L. Niu, X. Ding, M. Zhang and F. Yang for mass spectrometry; and L. Kong for cryo-EM data storage and backup. The project was funded by the National Key R&D Program of China (nos. 2017YFA0504700, 2017YFA0503702 and 2016YFA0502900), the Strategic Priority Research Program at the Chinese Academy of Sciences (nos. XDB08020302, XDB08030204 and XDB27020106), the Key Research Program of Frontier Sciences at the Chinese Academy of Sciences (no. QYZDB-SSW-SMC005) and the National Natural Science Foundation of China (nos. 31770778, 31700649 and 31600609). Z.L. and X. Zhang received scholarships from the ‘National Thousand Young Talents Program’ from the Office of Global Experts Recruitment in China. X.S., X.P. and J.M. were sponsored by the Youth Innovation Promotion Association at the Chinese Academy of Sciences.

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Contributions

M.L., W.C. and X.Zhang conceived the project. X.Zhao cultured the algae. X.S. performed sample preparation and characterization. X.S. and X.P. collected the cryo-EM data. J.M. and X.Zhang processed the cryo-EM data and reconstructed the cryo-EM maps. X.P. built and refined the structure model. X.P., M.L., X.Zhang and Z.L. analysed the structure. M.L., X.Zhang and Z.L. wrote the manuscript. All authors discussed and commented on the results and the manuscript.

Corresponding authors

Correspondence to Xinzheng Zhang or Mei Li.

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Journal peer review information: Nature Plants thanks Egbert Boekema and Jean-David Rochaix and the other anonymous reviewer(s) for their contribution to the peer review of this work.

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Su, X., Ma, J., Pan, X. et al. Antenna arrangement and energy transfer pathways of a green algal photosystem-I–LHCI supercomplex. Nat. Plants 5, 273–281 (2019). https://doi.org/10.1038/s41477-019-0380-5

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