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Developing an individualized treatment rule for Veterans with major depressive disorder using electronic health records

Abstract

Efforts to develop an individualized treatment rule (ITR) to optimize major depressive disorder (MDD) treatment with antidepressant medication (ADM), psychotherapy, or combined ADM-psychotherapy have been hampered by small samples, small predictor sets, and suboptimal analysis methods. Analyses of large administrative databases designed to approximate experiments followed iteratively by pragmatic trials hold promise for resolving these problems. The current report presents a proof-of-concept study using electronic health records (EHR) of n = 43,470 outpatients beginning MDD treatment in Veterans Health Administration Primary Care Mental Health Integration (PC-MHI) clinics, which offer access not only to ADMs but also psychotherapy and combined ADM-psychotherapy. EHR and geospatial databases were used to generate an extensive baseline predictor set (5,865 variables). The outcome was a composite measure of at least one serious negative event (suicide attempt, psychiatric emergency department visit, psychiatric hospitalization, suicide death) over the next 12 months. Best-practices methods were used to adjust for nonrandom treatment assignment and to estimate a preliminary ITR in a 70% training sample and to evaluate the ITR in the 30% test sample. Statistically significant aggregate variation was found in overall probability of the outcome related to baseline predictors (AU-ROC = 0.68, S.E. = 0.01), with test sample outcome prevalence of 32.6% among the 5% of patients having highest predicted risk compared to 7.1% in the remainder of the test sample. The ITR found that psychotherapy-only was the optimal treatment for 56.0% of patients (roughly 20% lower risk of the outcome than if receiving one of the other treatments) and that treatment type was unrelated to outcome risk among other patients. Change in aggregate treatment costs of implementing this ITR would be negligible, as 16.1% fewer patients would be prescribed ADMs and 2.9% more would receive psychotherapy. A pragmatic trial would be needed to confirm the accuracy of the ITR.

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Fig. 1: Predictors of high negative outcome risk in the test sample.
Fig. 2: Predictors of being optimized by psychotherapy only.

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Data availability

No. Data were obtained through a nontransferable data use agreement with the Veterans Health Administration.

References

  1. GBD 2019 Diseases and Injuries Collaborators. Global burden of 369 diseases and injuries in 204 countries and territories, 1990–2019: a systematic analysis for the Global Burden of Disease Study 2019. Lancet. 2020;396:P1204–22.

    Article  Google Scholar 

  2. Herrman H, Patel V, Kieling C, Berk M, Buchweitz C, Cuijpers P, et al. Time for united action on depression: a lancet-world psychiatric association commission. Lancet. 2022;399:957–1022.

    Article  PubMed  Google Scholar 

  3. Olfson M, Blanco C, Marcus SC. Treatment of adult depression in the United States. JAMA Intern Med. 2016;176:1482–91.

    Article  PubMed  Google Scholar 

  4. Cuijpers P, Miguel C, Harrer M, Plessen CY, Ciharova M, Ebert D, et al. Cognitive behavior therapy vs. control conditions, other psychotherapies, pharmacotherapies and combined treatment for depression: A comprehensive meta-analysis including 409 trials with 52,702 patients. World Psychiatry. 2023;22:105–15.

    Article  PubMed  PubMed Central  Google Scholar 

  5. Zainal NH. Is combined antidepressant medication (ADM) and psychotherapy better than either monotherapy at preventing suicide attempts and other psychiatric serious adverse events for depressed patients? A rare events meta-analysis. Psychol Med. Online ahead of print 15 November 2023. https://doi.org/10.1017/s0033291723003306.

  6. McHugh RK, Whitton SW, Peckham AD, Welge JA, Otto MW. Patient preference for psychological vs pharmacologic treatment of psychiatric disorders: a meta-analytic review. J Clin Psychiatry. 2013;74:595–602.

    Article  PubMed  PubMed Central  Google Scholar 

  7. Goodwin RD, Dierker LC, Wu M, Galea S, Hoven CW, Weinberger AH. Trends in U.S. depression prevalence from 2015 to 2020: the widening treatment gap. Am J Prev Med. 2022;63:726–33.

    Article  PubMed  PubMed Central  Google Scholar 

  8. Ross EL, Vijan S, Miller EM, Valenstein M, Zivin K. The cost-effectiveness of cognitive behavioral therapy versus second-generation antidepressants for initial treatment of major depressive disorder in the United States: a decision analytic model. Ann Intern Med. 2019;171:785–95.

    Article  PubMed  PubMed Central  Google Scholar 

  9. Cohen ZD, DeRubeis RJ. Treatment selection in depression. Annu Rev Clin Psychol. 2018;14:209–36.

    Article  PubMed  Google Scholar 

  10. Driessen E, Dekker JJM, Peen J, Van HL, Maina G, Rosso G, et al. The efficacy of adding short-term psychodynamic psychotherapy to antidepressants in the treatment of depression: a systematic review and meta-analysis of individual participant data. Clin Psychol Rev. 2020;80:101886.

    Article  PubMed  Google Scholar 

  11. Driessen E, Fokkema M, Dekker JJM, Peen J, Van HL, Maina G, et al. Which patients benefit from adding short-term psychodynamic psychotherapy to antidepressants in the treatment of depression? A systematic review and meta-analysis of individual participant data. Psychol Med. 2023;53:6090–101.

    Article  PubMed  Google Scholar 

  12. Kessler RC, van Loo HM, Wardenaar KJ, Bossarte RM, Brenner LA, Ebert DD, et al. Using patient self-reports to study heterogeneity of treatment effects in major depressive disorder. Epidemiol Psychiatr Sci. 2017;26:22–36.

    Article  CAS  PubMed  Google Scholar 

  13. Kraus C, Kadriu B, Lanzenberger R, Zarate CA Jr., Kasper S. Prognosis and improved outcomes in major depression: a review. Transl Psychiatry. 2019;9:127.

    Article  PubMed  PubMed Central  Google Scholar 

  14. Maj M, Stein DJ, Parker G, Zimmerman M, Fava GA, De Hert M, et al. The clinical characterization of the adult patient with depression aimed at personalization of management. World Psychiatry. 2020;19:269–93.

    Article  PubMed  PubMed Central  Google Scholar 

  15. Perna G, Alciati A, Daccò S, Grassi M, Caldirola D. Personalized psychiatry and depression: the role of sociodemographic and clinical variables. Psychiatry Investig. 2020;17:193–206.

    Article  PubMed  PubMed Central  Google Scholar 

  16. Cohen ZD, DeRubeis RJ, Hayes R, Watkins ER, Lewis G, Byng R, et al. The development and internal evaluation of a predictive model to identify for whom Mindfulness-Based Cognitive Therapy (MBCT) offers superior relapse prevention for recurrent depression versus maintenance antidepressant medication. Clin Psychol Sci. 2023;11:59–76.

    Article  PubMed  Google Scholar 

  17. DeRubeis RJ, Cohen ZD, Forand NR, Fournier JC, Gelfand LA, Lorenzo-Luaces L. The personalized advantage index: translating research on prediction into individualized treatment recommendations. A demonstration. PLoS One. 2014;9:e83875.

    Article  ADS  PubMed  PubMed Central  Google Scholar 

  18. Elkin I, Shea MT, Watkins JT, Imber SD, Sotsky SM, Collins JF, et al. National Institute of Mental Health treatment of depression collaborative research program. General effectiveness of treatments. Arch Gen Psychiatry. 1989;46:971–82.

    Article  CAS  PubMed  Google Scholar 

  19. Vittengl JR, Clark AL, Thase ME, Jarrett RB. Initial Steps to inform selection of continuation cognitive therapy or fluoxetine for higher risk responders to cognitive therapy for recurrent major depressive disorder. Psychiatry Res. 2017;253:174–81.

    Article  PubMed  PubMed Central  Google Scholar 

  20. Wallace ML, Frank E, Kraemer HC. A novel approach for developing and interpreting treatment moderator profiles in randomized clinical trials. JAMA Psychiatry. 2013;70:1241–7.

    Article  PubMed  PubMed Central  Google Scholar 

  21. Huibers MJ, van Breukelen G, Roelofs J, Hollon SD, Markowitz JC, van Os J, et al. Predicting response to cognitive therapy and interpersonal therapy, with or without antidepressant medication, for major depression: a pragmatic trial in routine practice. J Affect Disord. 2014;152-154:146–54.

    Article  PubMed  Google Scholar 

  22. Qiu X, Wang Y. Composite interaction tree for simultaneous learning of optimal individualized treatment rules and subgroups. Stat Med. 2019;38:2632–51.

    Article  MathSciNet  PubMed  PubMed Central  Google Scholar 

  23. Gunter L, Zhu J, Murphy SA. Variable selection for qualitative interactions. Stat Methodol. 2011;1:42–55.

    Article  MathSciNet  CAS  PubMed  PubMed Central  Google Scholar 

  24. Laber EB, Zhao YQ. Tree-based methods for individualized treatment regimes. Biometrika. 2015;102:501–14.

    Article  MathSciNet  CAS  PubMed  Google Scholar 

  25. Lorenzo-Luaces L, DeRubeis RJ, van Straten A, Tiemens B. A prognostic index (PI) as a moderator of outcomes in the treatment of depression: a proof of concept combining multiple variables to inform risk-stratified stepped care models. J Affect Disord. 2017;213:78–85.

    Article  PubMed  Google Scholar 

  26. Lorenzo-Luaces L, Rodriguez-Quintana N, Riley TN, Weisz JR. A placebo prognostic index (PI) as a moderator of outcomes in the treatment of adolescent depression: could it inform risk-stratification in treatment with cognitive-behavioral therapy, fluoxetine, or their combination? Psychother Res. 2021;31:5–18.

    Article  PubMed  Google Scholar 

  27. Nemeroff CB, Heim CM, Thase ME, Klein DN, Rush AJ, Schatzberg AF, et al. Differential responses to psychotherapy versus pharmacotherapy in patients with chronic forms of major depression and childhood trauma. Proc Natl Acad Sci USA. 2003;100:14293–6.

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  28. Song R, Kosorok M, Zeng D, Zhao Y, Laber E, Yuan M. On sparse representation for optimal individualized treatment selection with penalized outcome weighted learning. Stat. 2015;4:59–68.

    Article  MathSciNet  PubMed  PubMed Central  Google Scholar 

  29. Zhao Y, Zeng D, Rush AJ, Kosorok MR. Estimating individualized treatment rules using outcome weighted learning. J Am Stat Assoc. 2012;107:1106–18.

    Article  MathSciNet  CAS  PubMed  PubMed Central  Google Scholar 

  30. Luedtke A, Sadikova E, Kessler RC. Sample size requirements for multivariate models to predict between-patient differences in best treatments of major depressive disorder. Clin Psychol Sci. 2019;7:445–61.

    Article  Google Scholar 

  31. VanderWeele TJ, Luedtke AR, van der Laan MJ, Kessler RC. Selecting optimal subgroups for treatment using many covariates. J Epidemiol. 2019;30:334–41.

    Article  Google Scholar 

  32. Ashrafioun L, Pigeon WR, Conner KR, Leong SH, Oslin DW. Prevalence and correlates of suicidal ideation and suicide attempts among veterans in primary care referred for a mental health evaluation. J Affect Disord. 2016;189:344–50.

    Article  PubMed  Google Scholar 

  33. Trivedi RB, Post EP, Sun H, Pomerantz A, Saxon AJ, Piette JD, et al. Prevalence, comorbidity, and prognosis of mental health among US Veterans. Am J Public Health. 2015;105:2564–9.

    Article  PubMed  PubMed Central  Google Scholar 

  34. Chen RJ, Wang JJ, Williamson DFK, Chen TY, Lipkova J, Lu MY, et al. Algorithmic fairness in artificial intelligence for medicine and healthcare. Nat Biomed Eng. 2023;7:719–42.

    Article  PubMed  PubMed Central  Google Scholar 

  35. Kessler RC, Luedtke A. Pragmatic precision psychiatry: a new direction for optimizing treatment selection. JAMA Psychiatry. 2021;78:1384–90.

    Article  PubMed  Google Scholar 

  36. U.S. Department of Veterans Affairs. Corporate Data Warehouse (CDW): U.S. Department of Veterans Affairs; 2023 [updated 2023 Jan 11; cited 2023 Jun 26]. Available from: https://www.hsrd.research.va.gov/for_researchers/cdw.cfm.

  37. Hoffmire C, Stephens B, Morley S, Thompson C, Kemp J, Bossarte RM. VA suicide prevention applications network: a national healthcare system-based suicide event tracking system. Public Health Rep. 2016;131:816–21.

    Article  PubMed  PubMed Central  Google Scholar 

  38. U.S. Centers for Disease Control and Prevention. National Death Index: U.S. Centers for Disease Control and Prevention; 2022 [updated 2022 Jan 10; cited 2023 Jun 26]. Available from: https://www.cdc.gov/nchs/ndi/index.htm.

  39. Du S, Yao J, Shen GC, Lin B, Udo T, Hastings J, et al. Social drivers of mental health: A U.S. study using machine learning. Am J Prev Med. 2023;65:827–34.

    Article  PubMed  Google Scholar 

  40. Kent DM. Overall average treatment effects from clinical trials, one-variable-at-a-time subgroup analyses and predictive approaches to heterogeneous treatment effects: toward a more patient-centered evidence-based medicine. Clin Trials 2023;20:328–37.

    Article  PubMed  Google Scholar 

  41. van der Laan MJ, Polley EC, Hubbard AE. Super learner. Stat Appl Genet Mol Biol. 2007;6:Article25.

    MathSciNet  PubMed  Google Scholar 

  42. Polley E, LeDell E, Kennedy C, Lendle S, van der Laan M. SuperLearner: Super Learner Prediction: The Comprehensive R Archive Network; 2021 [updated 2021 May 10; cited 2023 Jun 26]. Available from: https://cran.r-project.org/web/packages/SuperLearner/index.html.

  43. Funk MJ, Westreich D, Wiesen C, Stürmer T, Brookhart MA, Davidian M. Doubly robust estimation of causal effects. Am J Epidemiol. 2011;173:761–7.

    Article  PubMed  PubMed Central  Google Scholar 

  44. Desai RJ, Franklin JM. Alternative approaches for confounding adjustment in observational studies using weighting based on the propensity score: a primer for practitioners. BMJ. 2019;367:l5657.

    Article  PubMed  Google Scholar 

  45. Breiman L. Random forests. Mach Learn. 2001;45:5–32.

    Article  Google Scholar 

  46. van der Laan M, Gruber S. Working Paper 290: Targeted minimum loss based estimation of an intervention specific mean outcome: U.C. Berkeley Division of biostatistics working paper series; 2011 [updated 2011 Aug; cited 2023 Jun 26]. Available from: https://biostats.bepress.com/ucbbiostat/paper290/.

  47. Coyle J tmle3: The Extensible TMLE framework: tlverse; 2021 [cited 2023 Jun 26]. Available from: https://tlverse.org/tmle3/.

  48. Athey S, Tibshirani R, Wager S. Generalized random forests. Ann Stat. 2019;47:1179–203.

    Article  MathSciNet  Google Scholar 

  49. Wager S, Athey S. Estimation and inference of heterogeneous treatment effects using random forests. J Am Stat Assoc. 2018;113:1228–42.

    Article  MathSciNet  CAS  Google Scholar 

  50. Tibshirani J, Athey S, Friedberg R, Hadad V, Hirshberg D, Miner L, et al. Package ‘grf’: Generalized Random Forests 2022 [updated 2022 Dec 15; cited 2023 Jun 26]. Available from: https://cran.r-project.org/web/packages/grf/grf.pdf.

  51. Lundberg S, Lee SI. A unified approach to interpreting model predictions. 31st International Conference on Neural Information Processing Systems; Long Beach, California, USA; December 4 - 9, 2017.

  52. Greenwell B. fastshap: Fast Approximate Shapley Values version 0.0.7 2021 [updated 2021 Dec 6; cited 2023 Jun 26]. Available from: https://cran.r-project.org/web/packages/fastshap/index.html.

  53. Collins GS, Reitsma JB, Altman DG, Moons KG. Transparent Reporting of a multivariable prediction model for Individual Prognosis or Diagnosis (TRIPOD): The TRIPOD statement. Ann Intern Med. 2015;162:55–63.

    Article  PubMed  Google Scholar 

  54. Penfold RB, Johnson E, Shortreed SM, Ziebell RA, Lynch FL, Clarke GN, et al. Predicting suicide attempts and suicide deaths among adolescents following outpatient visits. J Affect Disord. 2021;294:39–47.

    Article  PubMed  PubMed Central  Google Scholar 

  55. Kessler RC, Stein MB, Petukhova MV, Bliese P, Bossarte RM, Bromet EJ, et al. Predicting suicides after outpatient mental health visits in the Army Study to Assess Risk and Resilience in Servicemembers (Army STARRS). Mol Psychiatry. 2017;22:544–51.

    Article  CAS  PubMed  Google Scholar 

  56. Malhi GS, Bell E, Boyce P, Bassett D, Berk M, Bryant R, et al. The 2020 Royal Australian and New Zealand College of psychiatrists clinical practice guidelines for mood disorders: bipolar disorder summary. Bipolar Disord. 2020;22:805–21.

    Article  PubMed  Google Scholar 

  57. McIntyre RS, Rosenblat JD, Nemeroff CB, Sanacora G, Murrough JW, Berk M, et al. Synthesizing the evidence for ketamine and esketamine in treatment-resistant depression: an international expert opinion on the available evidence and implementation. Am J Psychiatry. 2021;178:383–99.

    Article  PubMed  PubMed Central  Google Scholar 

  58. McIntyre RS, Suppes T, Tandon R, Ostacher M. Florida best practice psychotherapeutic medication guidelines for adults with major depressive disorder. J Clin Psychiatry. 2017;78:703–13.

    Article  PubMed  Google Scholar 

  59. Ross EL, Zivin K, Maixner DF. Cost-effectiveness of electroconvulsive therapy vs. pharmacotherapy/psychotherapy for treatment-resistant depression in the United States. JAMA Psychiatry. 2018;75:713–22.

    Article  PubMed  PubMed Central  Google Scholar 

  60. Reti IM. A rational insurance coverage policy for repetitive transcranial magnetic stimulation for major depression. J Ect. 2013;29:e27–e28.

    Article  PubMed  Google Scholar 

  61. Delgadillo J, Ali S, Fleck K, Agnew C, Southgate A, Parkhouse L, et al. Stratified care vs. stepped care for depression: a cluster randomized clinical trial. JAMA Psychiatry. 2022;79:101–8.

    Article  PubMed  Google Scholar 

  62. Browne G, Steiner M, Roberts J, Gafni A, Byrne C, Dunn E, et al. Sertraline and/or interpersonal psychotherapy for patients with dysthymic disorder in primary care: 6-month comparison with longitudinal 2-year follow-up of effectiveness and costs. J Affect Disord. 2002;68:317–30.

    Article  PubMed  Google Scholar 

  63. Schramm E, van Calker D, Dykierek P, Lieb K, Kech S, Zobel I, et al. An intensive treatment program of interpersonal psychotherapy plus pharmacotherapy for depressed inpatients: acute and long-term results. Am J Psychiatry. 2007;164:768–77.

    Article  PubMed  Google Scholar 

  64. Riggs PD, Mikulich-Gilbertson SK, Davies RD, Lohman M, Klein C, Stover SK. A randomized controlled trial of fluoxetine and cognitive behavioral therapy in adolescents with major depression, behavior problems, and substance use disorders. Arch Pediatr Adolesc Med. 2007;161:1026–34.

    Article  PubMed  Google Scholar 

  65. Hollon SD, DeRubeis RJ, Evans MD, Wiemer MJ, Garvey MJ, Grove WM, et al. Cognitive therapy and pharmacotherapy for depression. Singly and in combination. Arch Gen Psychiatry. 1992;49:774–81.

    Article  CAS  PubMed  Google Scholar 

  66. Vitiello B, Silva SG, Rohde P, Kratochvil CJ, Kennard BD, Reinecke MA, et al. Suicidal events in the treatment for adolescents with depression study (TADS). J Clin Psychiatry. 2009;70:741–7.

    Article  PubMed  PubMed Central  Google Scholar 

  67. Molnar C. Interpretable machine learning: a guide for making black box models explainable. Christoph Mulnar: Munich, Germany, 2022.

  68. Meehan AJ, Lewis SJ, Fazel S, Fusar-Poli P, Steyerberg EW, Stahl D, et al. Clinical prediction models in psychiatry: A systematic review of two decades of progress and challenges. Mol Psychiatry. 2022;27:2700–8.

    Article  PubMed  PubMed Central  Google Scholar 

  69. Furman JL, Trivedi MH. Chapter 29 - Biomarker-based treatment selection: A precision medicine approach for depression. In: Quevedo J, Carvalho AF, Zarate CA, editors. Neurobiology of Depression. Academic Press: Cambridge, MA, 2019, pp 331–40.

  70. Glasgow RE, Kwan BM, Matlock DD. Realizing the full potential of precision health: the need to include patient-reported health behavior, mental health, social determinants, and patient preferences data. J Clin Transl Sci. 2018;2:183–5.

    Article  PubMed  PubMed Central  Google Scholar 

  71. Leung LB, Ziobrowski HN, Puac-Polanco V, Bossarte RM, Bryant C, Keusch J, et al. Are veterans getting their preferred depression treatment? A national observational study in the Veterans Health Administration. J Gen Intern Med. 2022;37:3235–41.

    Article  PubMed  Google Scholar 

  72. Delevry D, Le QA. Effect of treatment preference in randomized controlled trials: Systematic review of the literature and meta-analysis. Patient. 2019;12:593–609.

    Article  PubMed  Google Scholar 

  73. Windle E, Tee H, Sabitova A, Jovanovic N, Priebe S, Carr C. Association of patient treatment preference with dropout and clinical outcomes in adult psychosocial mental health interventions: a systematic review and meta-analysis. JAMA Psychiatry. 2020;77:294–302.

    Article  PubMed  Google Scholar 

  74. Maslej MM, Furukawa TA, Cipriani A, Andrews PW, Sanches M, Tomlinson A, et al. Individual differences in response to antidepressants: a meta-analysis of placebo-controlled randomized clinical trials. JAMA Psychiatry. 2021;78:490–7.

    Article  PubMed  Google Scholar 

  75. Kamenov K, Twomey C, Cabello M, Prina AM, Ayuso-Mateos JL. The efficacy of psychotherapy, pharmacotherapy and their combination on functioning and quality of life in depression: a meta-analysis. Psychol Med. 2017;47:414–25.

    Article  CAS  PubMed  Google Scholar 

  76. Guo Z, Cheng J, Lorch SA, Small DS. Using an instrumental variable to test for unmeasured confounding. Stat Med. 2014;33:3528–46.

    Article  MathSciNet  PubMed  PubMed Central  Google Scholar 

  77. Vertosick EA, Assel M, Vickers AJ. A systematic review of instrumental variable analyses using geographic region as an instrument. Cancer Epidemiol. 2017;51:49–55.

    Article  PubMed  PubMed Central  Google Scholar 

  78. U.S. Department of Veterans Affairs. Primary Care-Mental Health Integration (PC-MHI) 2022 [updated 2022 Sep 19. Available from: https://www.patientcare.va.gov/primarycare/PCMHI.asp.

  79. Brookhart MA, Schneeweiss S. Preference-based instrumental variable methods for the estimation of treatment effects: assessing validity and interpreting results. Int J Biostat. 2007;3:Article 14.

    Article  MathSciNet  PubMed  Google Scholar 

  80. Davies NM, Gunnell D, Thomas KH, Metcalfe C, Windmeijer F, Martin RM. Physicians’ prescribing preferences were a potential instrument for patients’ actual prescriptions of antidepressants. J Clin Epidemiol. 2013;66:1386–96.

    Article  PubMed  PubMed Central  Google Scholar 

  81. Ertefaie A, Small DS, Flory JH, Hennessy S. A tutorial on the use of instrumental variables in pharmacoepidemiology. Pharmacoepidemiol Drug Saf. 2017;26:357–67.

    Article  PubMed  Google Scholar 

  82. Swanson SA, Miller M, Robins JM, Hernán MA. Definition and evaluation of the monotonicity condition for preference-based instruments. J Epidemiol. 2015;26:414–20.

    Article  Google Scholar 

  83. Qiu H, Carone M, Sadikova E, Petukhova M, Kessler RC, Luedtke A. Optimal individualized decision rules using instrumental variable methods. J Am Stat Assoc. 2021;116:174–91.

    Article  MathSciNet  CAS  PubMed  Google Scholar 

  84. Adekkanattu P, Sholle ET, DeFerio J, Pathak J, Johnson SB, Campion TR Jr. Ascertaining depression severity by extracting Patient Health Questionnaire-9 (PHQ-9) scores from clinical notes. AMIA Annu Symp Proc. 2018;2018:147–56.

    PubMed  PubMed Central  Google Scholar 

  85. Xu Z, Vekaria V, Wang F, Cukor J, Su C, Adekkanattu P, et al. Using machine learning to predict antidepressant treatment outcome from electronic health records. Psychiatr Res Clin Pract. 2023;5:118–25.

    Article  PubMed  PubMed Central  Google Scholar 

  86. Han S, Zhang RF, Shi L, Richie R, Liu H, Tseng A, et al. Classifying social determinants of health from unstructured electronic health records using deep learning-based natural language processing. J Biomed Inform. 2022;127:103984.

    Article  PubMed  Google Scholar 

  87. Wang G, Yang G, Du Z, Fan L, Li X ClinicalGPT: Large language models finetuned with diverse medical data and comprehensive evaluation. arXiv. 2023; e-pub ahead of print 16 June 2023; https://doi.org/10.48550/arXiv.2306.0996.

  88. U.S. Department of Veterans Affairs. VA Informatics and Computing Infrastructure (VINCI): U.S. Department of Veterans Affairs; 2022 [updated 2022 March 16; cited 2023 Jun 27]. Available from: https://www.research.va.gov/programs/vinci/default.cfm.

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Funding

The research reported here was funded by the U.S. National Institute of Mental Health, Grant number R01MH121478, and by the VA Center of Excellence for Suicide Prevention, Canandaigua VA Medical Center.

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RCK and RMB conceptualized and designed the study. RCK and NHZ drafted the manuscript. HL and ES led the statistical analysis. RMB obtained funding. CJK, RCK, AL, ES, and SW provided administrative, technical, and material support. RCK, AL, NAS, ES, and SW supervised the study. All authors were involved in the acquisition, analysis, or interpretation of data. All critically revised the final manuscript draft and approved the submission.

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Correspondence to Ronald C. Kessler.

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In the past 3 years, RCK was a consultant for Cambridge Health Alliance, Canandaigua VA Medical Center, Holmusk, Partners Healthcare, Inc., RallyPoint Networks, Inc., and Sage Therapeutics. He has stock options in Cerebral Inc., Mirah, PYM, Roga Sciences and Verisense Health. The remaining authors declare no competing interests.

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Zainal, N.H., Bossarte, R.M., Gildea, S.M. et al. Developing an individualized treatment rule for Veterans with major depressive disorder using electronic health records. Mol Psychiatry (2024). https://doi.org/10.1038/s41380-024-02500-0

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