Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Brief Communication
  • Published:

A novel POC1A variant in an alternatively spliced exon causes classic SOFT syndrome: clinical presentation of seven patients

Abstract

Biallelic pathogenic variants in POC1A are ultra rare. They have been reported in 13 families as causing either Short stature, Onychodysplasia, Facial dysmorphism, and hypoTrichosis (SOFT) syndrome, or a milder partially overlapping phenotype, variant POC1A-related syndrome. This pleiotropic effect is likely precipitated by the variant’s location and respective affected protein domain. Here, we describe seven patients from two consanguineous Omani families with classic SOFT syndrome and a novel homozygous POC1A variant (c.64G>T; p.(Val22Phe)), which is the first one described for the alternative exon 2. This result refines the POC1A mutational spectrum relevant for exertion of the described pleiotropic effect. Furthermore, six of our patients experienced recurrent mild to severe respiratory difficulties that have not been previously reported for SOFT syndrome and may be an underdiagnosed or a genotype-specific complication that warrants attention in future studies. Thus, our study unravels new aspects of the genotype-phenotype correlation suggested by previous reports.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1
Fig. 2

References

  1. Sarig O, Nahum S, Rapaport D, et al. Short stature, onychodysplasia, facial dysmorphism, and hypotrichosis syndrome is caused by a POC1A mutation. Am J Hum Genet. 2012;91:337–42.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Shaheen R, Faqeih E, Shamseldin HE, et al. POC1A truncation mutation causes a ciliopathy in humans characterized by primordial dwarfism. Am J Hum Genet. 2012;91:330–6.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Chen J-H, Segni M, Payne F, et al. Truncation of POC1A associated with short stature and extreme insulin resistance. J Mol Endocrinol. 2015;55:147–58.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Giorgio E, Rubino E, Bruselles A, et al. A syndromic extreme insulin resistance caused by biallelic POC1A mutations in exon 10. Eur J Endocrinol. 2017;177:K21–K27.

    Article  CAS  PubMed  Google Scholar 

  5. Lek M, Karczewski KJ, Minikel EV, et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016;536:285–91.

    CAS  PubMed  PubMed Central  Google Scholar 

  6. CENTOGENE AG, Rostock, Germany, 06/06/2018. World Wide Web URL: www.centomd.com.

  7. Trujillano D, Bertoli-Avella AM, Kumar Kandaswamy K, et al. Clinical exome sequencing: results from 2819 samples reflecting 1000 families. Eur J Hum Genet. 2017;25:176–82.

    Article  CAS  PubMed  Google Scholar 

  8. Saida K, Silva S, Solar B, et al. SOFT syndrome in a patient from Chile. Am J Med Genet Part A December 2018.

  9. Barraza-García J, Iván Rivera-Pedroza C, Salamanca L, et al. Two novel POC1A mutations in the primordial dwarfism, SOFT syndrome: clinical homogeneity but also unreported malformations. Am J Med Genet Part A. 2016;170:210–6.

    Article  Google Scholar 

  10. Zhang W, Taylor SP, Ennis HA, et al. Expanding the genetic architecture and phenotypic spectrum in the skeletal ciliopathies. Hum Mutat. 2018;39:152–66.

    Article  CAS  PubMed  Google Scholar 

  11. Pearson CG, Osborn DPS, Giddings TH, Beales PL, Winey M. Basal body stability and ciliogenesis requires the conserved component Poc1. J Cell Biol. 2009;187:905–20.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Venoux M, Tait X, Hames RS, Straatman KR, Woodland HR, Fry AM. Poc1A and Poc1B act together in human cells to ensure centriole integrity. J Cell Sci. 2013;126:163–75.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Koparir A, Karatas OF, Yuceturk B, et al. Novel POC1A mutation in primordial dwarfism reveals new insights for centriole biogenesis. Hum Mol Genet. 2015;24:5378–87.

    Article  CAS  PubMed  Google Scholar 

  14. Min KoJ, Jung S, Seo J, et al. SOFT syndrome caused by compound heterozygous mutations of POC1A and its skeletal manifestation. J Hum Genet. 2016;61:561–4.

    Article  Google Scholar 

  15. Mostofizadeh N, Gheidarloo M, Hashemipour M, Dehkordi EH. SOFT syndrome: the first case in Iran. Adv Biomed Res. 2018;7:128.

    Article  PubMed  PubMed Central  Google Scholar 

  16. The Genotype-Tissue Expression (GTEx) Project; https://gtexportal.org/; 08/02/19.

Download references

Acknowledgements

We thank the patients and their family members for participation.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nana-Maria Grüning.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Al-Kindi, A., Al-Shehhi, M., Westenberger, A. et al. A novel POC1A variant in an alternatively spliced exon causes classic SOFT syndrome: clinical presentation of seven patients. J Hum Genet 65, 193–197 (2020). https://doi.org/10.1038/s10038-019-0693-2

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s10038-019-0693-2

This article is cited by

Search

Quick links