Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme

Abstract

Hydrogen exchange experiments monitored by NMR and mass spectrometry reveal that the amyloidogenic D67H mutation in human lysozyme significantly reduces the stability of the β-domain and the adjacent C-helix in the native structure. In addition, mass spectrometric data reveal that transient unfolding of these regions occurs with a high degree of cooperativity. This behavior results in the occasional population of a partially structured intermediate in which the three α-helices that form the core of the α-domain still have native-like structure, whereas the β-domain and C-helix are simultaneously substantially unfolded. This finding suggests that the extensive intermolecular interactions that will be possible in such a species are likely to initiate the aggregation events that ultimately lead to the formation of the well-defined fibrillar structures observed in the tissues of patients carrying this mutation in the lysozyme gene.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: 15N-1H HSQC NMR spectra of the wild type and D67H variant lysozymes.
Figure 2: Comparison of the protection factors for the D67H variant and wild type lysozyme.
Figure 3: Acceleration of hydrogen exchange rates in a substructure of the lysozyme variant.
Figure 4: Electrospray mass spectra of wild type and variant lysozymes demonstrating the unfolding dynamics.
Figure 5: Hydrogen exchange protection as a function of time.
Figure 6: Electrospray mass spectra of the partially exchanged peptide fragments of the D67H variant.

Similar content being viewed by others

Accession codes

Accessions

Protein Data Bank

References

  1. Koo, E.H., Lansbury, P.T. & Kelly, J.W. Amyloid diseases: abnormal protein aggregation in neurodegeneration. Proc. Natl. Acad. Sci. USA 96, 9989–9990 (1999).

    Article  CAS  Google Scholar 

  2. Perutz, M.F. Glutamine repeats and neurodegenerative diseases: molecular aspects. Trends Biochem. Sci. 24, 58–63 (1999).

    Article  CAS  Google Scholar 

  3. Tan, S.Y. & Pepys, M.B. Amyloidosis. Histopathology 25, 403–414 (1994).

    Article  CAS  Google Scholar 

  4. Pepys, M.B. et al. Human lysozyme gene mutations cause hereditary systemic amyloidosis. Nature 362, 553–557 (1993).

    Article  CAS  Google Scholar 

  5. Booth, D.R. et al. Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis. Nature 385, 787–793 (1997).

    Article  CAS  Google Scholar 

  6. Morozova-Roche, L.A. et al. Amyloid fibril formation and seeding by wild type human lysozyme and its disease-related mutational variants. J. Struct. Biol. 130, 339–351 (2000).

    Article  CAS  Google Scholar 

  7. Goda, S. et al. Amyloid protofilament formation of hen egg lysozyme in highly concentrated ethanol solution. Protein Sci. 9, 369–375 (2000).

    Article  CAS  Google Scholar 

  8. Krebs, M.R.H. et al. Formation and seeding of amyloid fibrils from wild-type hen lysozyme and a peptide fragment from the β-domain. J. Mol. Biol. 300, 541–548 (2000).

    Article  CAS  Google Scholar 

  9. Kelly, J.W. The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways. Curr. Opin. Struct. Biol. 8, 101–106 (1998).

    Article  CAS  Google Scholar 

  10. Englander, S.W. Protein folding intermediates and pathways studied by hydrogen exchange. Annu. Rev. Biophys. Biomol. Struct. 29, 213–238 (2000).

    Article  CAS  Google Scholar 

  11. Roder, H., Elove, G.A. & Englander, S.W. Structural characterization of folding intermediates in cytochrome c by H exchange labeling and proton NMR. Nature 335, 700–704 (1988).

    Article  CAS  Google Scholar 

  12. Raschke, T.M. & Marqusee, S. Hydrogen exchange studies of protein structure. Curr. Opin. Biotechnol. 9, 80–86 (1998).

    Article  CAS  Google Scholar 

  13. Bai, Y., Milne, J.S., Mayne, L. & Englander, S.W. Primary structure effects on peptide group hydrogen exchange. Proteins Struct. Funct. Genet. 17, 75–86 (1993).

    Article  CAS  Google Scholar 

  14. Hooke, S. Cooperative elements in protein folding monitored by electrospray ionization mass spectrometry. J. Am. Chem. Soc. 117, 7548–7549 (1995).

    Article  CAS  Google Scholar 

  15. Miranker, A., Kruppa, G.H., Robinson, C.V., Aplin, R.T. & Dobson, C.M. Isotopic-labeling strategy for the assignment of protein fragments generated for mass spectrometry. J. Am. Chem. Soc. 118, 7402–7403 (1996).

    Article  CAS  Google Scholar 

  16. Miranker, A., Robinson, C.V., Radford, S.E., Aplin, R.T. & Dobson, C.M. Detection of transient protein folding populations by mass spectrometry. Science 262, 896–899 (1993).

    Article  CAS  Google Scholar 

  17. Wang, L., Lane, L.C. & Smith, D.L. Detecting structural changes in viral capsids by hydrogen exchange and mass spectrometry. Protein Sci. 10, 1234–1232 (2001).

    Article  CAS  Google Scholar 

  18. Engen, J.R., Smithgall, W.H., Gmeiner, T.E. & Smith, D.L. Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry. Biochemistry 36, 14384–14391 (1997).

    Article  CAS  Google Scholar 

  19. Zhang, Z. & Smith, D.L. Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation. Protein Sci. 2, 522–531 (1993).

    Article  CAS  Google Scholar 

  20. Tito, P. & Robinson, C.V. Hydrogen exchange of proteins in partially folded states: a quadrupole time-of-flight approach. Methods Enzymol. In the press (2002).

  21. Redfield, C. & Dobson, C.M. 1H NMR studies of human lysozyme: spectral assignment and comparison with hen lysozyme. Biochemistry 29, 7201–7214 (1990).

    Article  CAS  Google Scholar 

  22. Dobson, C.M., Evans, P.A. & Radford, S.E. Understanding how proteins fold: the lysozyme story so far. Trends Biochem. Sci. 19, 31–37 (1994).

    Article  CAS  Google Scholar 

  23. Hooke, S.D., Radford, S.E. & Dobson, C.M. Refolding of human lysozyme — a comparison with the structurally homologous hen lysozyme. Biochemistry 33, 5867–5876 (1994).

    Article  CAS  Google Scholar 

  24. Dobson, C.M. The structural basis of protein folding and its links with human disease. Phil. Trans. R. Soc. Lond. A/B 356, 133–145 (2001).

    Article  CAS  Google Scholar 

  25. Chiti, F. et al. Designing conditions for in vitro formation of amyloid protofilaments and fibrils. Proc. Natl. Acad. Sci. USA 96, 3590–3594 (1999).

    Article  CAS  Google Scholar 

  26. Guijarro, J.I.I., Sunde, M., Jones, J.A., Campbell, I.D. & Dobson, C.M. Amyloid fibril formation by an SH3 domain. Proc. Natl. Acad. Sci. USA 95, 4224–4228. (1998).

    Article  CAS  Google Scholar 

  27. Chamberlain, A. et al. Ultrastructural organization of amyloid fibrils by atomic force microscopy. Biophys. J. 79, 3282–3293 (2000).

    Article  CAS  Google Scholar 

  28. Dobson, C.M., Sali, A. & Karplus, M. Protein folding: A perspective from theory and experiment. Angew. Chem. Int. Ed. Engl. 37, 868–893 (1998).

    Article  Google Scholar 

  29. Canet, D. et al. Mechanistic studies of the folding of human lysozyme and the origin of amyloidogenic behavior in its disease related variants. Biochemistry 38, 6419–6427 (1999).

    Article  CAS  Google Scholar 

  30. Spencer, A. et al. Expression, purification and characterisation of the recombinant calcium-binding equine lysozyme secreted by the filamentous fungus Aspergillus niger. Protein Exp. Purif. 16, 171–180 (1999).

    Article  CAS  Google Scholar 

  31. Woodruff, N. PhD. Thesis. Investigation of protein structure and folding by NMR spectroscopy. (University of Oxford; 1998).

  32. Ohkubo, T., Taniyama, Y. & Kikuchi, N. 1H and 15NMR study of human lysozyme. J. Biochem. 110, 1022–1029 (1991).

    Article  CAS  Google Scholar 

  33. Wilm, M. & Mann, M. Analytical properties of the nanoelectrospray ion source. Anal. Chem. 68, 1–8 (1996).

    Article  CAS  Google Scholar 

  34. Chung, E.W. et al. Hydrogen exchange properties of proteins in native and denatured states monitored by mass spectrometry and NMR. Protein Sci. 6, 1316–1324 (1997).

    Article  CAS  Google Scholar 

  35. Koradi, R., M, B. & Wuthrich, K. MOLMOL: A program for the display and analysis of macromolecular structures. J. Mol. Graph. 14, 51–55 (1996).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

D.C. was supported by a fellowship from the European Community, C.R. is supported by a BBSRC Advanced Research Fellowship, and C.V.R. and M.S. hold Royal Society University Research Fellowships. This work is in part a contribution from the Oxford Centre for Molecular Sciences, which is supported by EPSRC, BBSRC and MRC. The research of C.M.D. is also supported in part by a programme grant from the Wellcome Trust.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Carol V. Robinson or Christopher M. Dobson.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Canet, D., Last, A., Tito, P. et al. Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme. Nat Struct Mol Biol 9, 308–315 (2002). https://doi.org/10.1038/nsb768

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nsb768

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing