The predicted distribution of globular proteins over folding types in five complete genomes differs from the tendencies observed in known protein structures. The ratio between the number of predicted membrane and globular proteins is conserved.
This is a preview of subscription content, access via your institution
Relevant articles
Open Access articles citing this article.
-
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea
BMC Bioinformatics Open Access 10 November 2015
-
PROMPT: a protein mapping and comparison tool
BMC Bioinformatics Open Access 04 July 2006
Access options
Subscribe to this journal
Receive 12 print issues and online access
$189.00 per year
only $15.75 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
References
Chothia, C. Nature 357, 543–544 (1992).
Orengo, C.A., Jones, D.T., Thornton, J.M. Nature 372, 631–634 (1994).
Goffeau, A. et al. Science 274, 546–567 (1996).
Bult, C.J. et al. Science 273, 1058–1073 (1996).
Fleischmann, R.D. et al. Science 269, 496–512 (1995).
Fraser, C.M. et al. Science 270, 397–403 (1995).
Himmelreich, R. et al. Nucleic Acids Res. 24, 4420–4449 (1996).
Casari, G., Daruvar, de, A., Sander, C. & Schneider, R. Trends Genet. 12, 244–245 (1996).
Bernstein, F.C. et al. J. Mol. Biol. 112, 535–542 (1977).
Goffeau, A., Slonimski, P., Nakai, K. & Risler, J.L. Yeast 9, 691–702 (1993).
Bork, P. et al. Prot. Sci. 1, 1677–1690 (1992).
Mushegian, A.R. & Koonin, E.V. Proc. Natl. Acad. Sci. USA 93, 10268–10273 (1996).
Razin, S. FEMS Microbiol. Lett. 100, 423–432 (1992).
Labedan, B. & Riley, M. Mol. Biol. Evol. 12, 980–987 (1995).
Koonin, E.V., Tatusov, R.L. & Rudd, K.E. Proc. Natl. Acad Sci. USA 92, 11921–11925 (1995).
Brenner, S.E., Hubbard, T., Murzin, A. & Chothia, C. Nature 378, 140 (1995).
Termier, M. & Kalogeropoulos, A. yeast 12, 369–484 (1996).
Bork, P., Ouzounis, C. & Sander, C. Curr. Opin. Struct. Biol. 4, 393–403 (1994).
Bork, P. et al. Mol. Microbiol. 16, 955–967 (1995).
Koonin, E.V., Tatusov, R.L. & Rudd, K.E. Meth. Enz. 266, 295–322 (1996).
George, D.G., Barker, W.C., Mewes, H.W., Pfeiffer, F. & Tsugita, A. Nucl. Acids Res. 24, 17–20 (1996).
Frishman, D. & Argos, P. Proteins: Strut. Func. Genet. 27, 329–335 (1997).
Pearson, W.R. Meth. Enz. 183, 63–98 (1990).
Frishman, D. & Argos, P. Proteins: Struc. Func. Genet. 23, 566–579 (1995).
Frishman, D. & Argos, P. Prot. Engng. 9, 133–142 (1996).
Nakashima, H., Nishikawa, K. & Ooi, T. J. Biochem. 99, 153–162 (1986).
Wooton, J.C. Curr. Opin. Struct. Biol. 4, 413–421 (1994).
Thompson, J.D., Higgins, D.G., Gibson, T.J. Nucl. Acids Res. 22, 4673–4680 (1994).
Persson, B. & Argos, P. J. Mol. Biol. 237, 182–192 (1994).
Kyte, J. & Doolittle, R.F. J. Mol. Biol. 157, 105–132 (1982).
Frishman, D. & Mewes, H.-W. Trends. Genet. in the press (1997).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Frishman, D., Mewes, H. Protein structural classes in five complete genomes. Nat Struct Mol Biol 4, 626–628 (1997). https://doi.org/10.1038/nsb0897-626
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1038/nsb0897-626
This article is cited by
-
Structural Characterization of Open Reading Frame-Encoded Functional Genes from Tilapia Lake Virus (TiLV)
Molecular Biotechnology (2019)
-
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea
BMC Bioinformatics (2015)
-
Application of Mistic to improving the expression and membrane integration of histidine kinase receptors from Escherichia coli
Journal of Structural and Functional Genomics (2007)
-
PROMPT: a protein mapping and comparison tool
BMC Bioinformatics (2006)
-
Universal Sharing Patterns in Proteomes and Evolution of Protein Fold Architecture and Life
Journal of Molecular Evolution (2005)