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Structure of a human Clara cell phospholipid-binding protein–ligand complex at 1. 9 Å resolution

Abstract

The Clara cell phospholipid-binding protein, previously referred to as CC10, is a homodimeric protein of Mr 15, 800. It is secreted into the bronchioalveolar lining layer in mammalian lung. A combination of X-ray crystallography and chemical analysis was used to determine that phosphatidylcholine and phophatidylinositol are bound to the protein as isolated from human lung lavage. We now report the crystal structure of the protein–phospholipid complex at 1.9 Å resolution. The phospholipid is bound inside the protein's large hydrophobic cavity. A model is proposed for the manner in which a channel may open to provide access to the cavity, allowing the binding or potential release of phospholipid.

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References

  1. Rueckert, D.G. & Schmidt, K. Lipid transfer proteins. Chem. Phys. Lipids 56, 1–20 (1990).

    Article  CAS  Google Scholar 

  2. Wirtz, K.W.A. Phospholipid transfer proteins: from lipid monolayers to cells. Klin. Wochenschr. 69, 105–111 (1991).

    Article  CAS  Google Scholar 

  3. Engle, M.J., Van Golde, L.M.G. & Wirtz, K.W. Transfer of phospholipids between subcellular fractions of the lung. FEBS Lett. 86, 277–281 (1978).

    Article  CAS  Google Scholar 

  4. Scarpelli, E.M. Surfactants and the lining of the lung 1–126 (Johns Hopkins University Press, Baltimore, 1988).

  5. Gazdar, A.F. & Linnoila, R.I. The pathology of lung cancer — changing concepts and newer diagnostic techniques. Semin. Oncol. 15, 215–225 (1988).

    CAS  PubMed  Google Scholar 

  6. Evans, M.J., Cabral-Anderson, L.J. & Freeman, G. Role of Clara cell in renewal of the bronchial epithelium. Lab. Invest. 38, 648–655 (1978).

    CAS  PubMed  Google Scholar 

  7. Boyd, M.R. Evidence for the Clara cell as a site of cytochrome P450-dependent mixed-function oxidase activity in lung. Nature 269, 713–715 (1977).

    Article  CAS  Google Scholar 

  8. Singh, G. et al. Amino-acid and cDNA nucleotide sequences of human Clara cell 10 kDa protein. Biochim. biophys. Acta 950, 329–337 (1988).

    Article  CAS  Google Scholar 

  9. Singh, G. et al. Clara cell 10 kda protein (CC10): comparison of structure and function to uteroglobin. Biochim. biophys. Acta 1039, 348–355 (1990).

    Article  CAS  Google Scholar 

  10. Mantile, G., et al. Human Clara cell 10-kDa protein is the counterpart of rabbit uteroglobin. J. biol. Chem. 268, 20343–20351 (1993).

    CAS  PubMed  Google Scholar 

  11. Andersson, O. et al. Purification and level of expression in bronchoalveolar lavage of a human polychlorinated biphenyl (PCB)-binding protein: evidence for a structural and functional kinship to the multihormonally regulated protein uteroglobin. Am. J. Respir. Cell molec. Biol. 5, 6–12 (1991).

    Article  CAS  Google Scholar 

  12. Gillner, M. et al. The binding of methylsulfonyl-polychlorobiphenyls to uteroglobin. J. steroid Biochem. 31, 27–33 (1988).

    Article  CAS  Google Scholar 

  13. Peter, W. et al. Interchain cysteine bridges control entry of progesterone to the central cavity of the uteroglobin dimer. Prot. Engng. 5, 351–359 (1992).

    Article  CAS  Google Scholar 

  14. Peter, W., Brüller, H.-J., Vriend, G., Beato, M. & Suske, G. Identification of residues essential for progesterone binding to uteroglobin by site-directed mutagenesis. J. steroid Biochem. molec. Biol. 38, 27–33 (1991).

    Article  CAS  Google Scholar 

  15. Tancredi, T., Temussi, P.A. & Beato, M. Interaction of oxidized and reduced uteroglobin with progesterone. Eur. J. Biochem. 122, 101–104 (1982).

    Article  CAS  Google Scholar 

  16. Bourbon, J.R. in Pulmonary surfactant: biochemical, functional, regulatory, and clinical concepts (ed. Bourbon, J. R.) 127–141 (CRC Press, Florida, 1991).

    Google Scholar 

  17. Robinson, D.H., Kirk, K.L. & Benos, D.J. Macromolecular transport in rabbit blastocysts: evidence for a specific uteroglobin transport system. Molec. cell. Endocr. 63, 227–237 (1989).

    Article  CAS  Google Scholar 

  18. van Tilbeurgh, H. et al. Interfacial activation of the lipase–procolipase complex by mixed micelles revealed by X-ray crystallography. Nature 362, 814–820 (1993).

    Article  CAS  Google Scholar 

  19. Grippo, J.F., Tienrungroj, W., Dahmer, M.K., Housley, P.R. & Pratt, W.B. Evidence that the endogenous heat-stable glucocorticoid receptor-activating factor is thioredoxin. J. biol. Chem. 258, 13658–13664 (1983).

    CAS  PubMed  Google Scholar 

  20. Baker, M.E. Amino acid sequence homology between rat prostatic steroid binding protein and rabbit uteroglobin. Biochem. biophys. Res. Commun. 114, 325–330 (1983).

    Article  CAS  Google Scholar 

  21. Morgenstern, J.P., et al. Amino acid sequence of Fel dl, the major allergen of the domestic cat: protein sequence analysis and cDNA cloning. Proc. natn. Acad. Sci. U.S.A. 88, 9690–9694 (1991).

    Article  CAS  Google Scholar 

  22. Miele, L., Cordella-Miele, E., Facchiano, A. & Mukherjee, A.B. Novel anti-inflammatory peptides from the region of highest similarity between uteroglobin and lipocortin I. Nature 335, 726–730 (1988).

    Article  CAS  Google Scholar 

  23. Huber, R. et al. Crystal and molecular structure of human annexin V after refinement. J. molec. Biol. 223, 683–704 (1992).

    Article  CAS  Google Scholar 

  24. Singh, G. et al. Identification, cellular localization, isolation and characterization of human Clara cell 10 KD protein. J. Histochem. Cytochem. 36, 73–80 (1988).

    Article  CAS  Google Scholar 

  25. Umland, T.C. et al. The crystallization and preliminary analysis of two crystal forms of human Clara celss 16 kDa protein (cc 10). Acta cryst., Section D, (in the press).

  26. Blum, M., Metcalf, P., Harrison, S.C. & Wiley, D.C. A system for collection and on-line integration of X-ray diffraction data from a multiwire area detector. J. appl. Cryst. 20, 235–242 (1987).

    Article  CAS  Google Scholar 

  27. Howard, A.J., Gilliland, G.L., Finzel, B.C. & Poulos, T.L. The use of an imaging proportional counter in macromolecular crystallography. J. appl. Cryst. 20, 383–387 (1987).

    Article  CAS  Google Scholar 

  28. Weissman, L. in Computational crystallography (ed. Sayre, D.) 56–63 (Clarendon Press, Oxford, 1982).

    Google Scholar 

  29. Fitzgerald, P.M.D. MERLOT: an integrated package of computer programs for the determination of crystal structures by molecular replacement. J. appl. Cryst. 21, 273–278 (1988).

    Article  CAS  Google Scholar 

  30. Umland, T.C. et al. Refined structure of rat Clara cell 17 kDa protein at 3.0 Å resolution. J. molec. Biol. 224, 442–448 (1992).

    Article  Google Scholar 

  31. Furey, W. & Swaminathan, S. PHASES — a program package for the processing and analysis of diffraction data from macromolecules. American crystallographic association meeting, New Orleans, LA, abstract PA33 (1990).

  32. Bruenger, A.T., Kuriyan, J. & Karplus, M. Crystallographic R factor refinement by molecular dynamics. Science 235, 458–460 (1987).

    Article  CAS  Google Scholar 

  33. Furey, W., Wang, B.C. & Sax, M. Crystallographic computing on an array processor. J. appl. Cryst.. 15, 160–166 (1982).

    Article  CAS  Google Scholar 

  34. Sack, J.S. CHAIN — A crystallographic modeling program. J. molec. Graphics 6, 224–225 (1988).

    Article  Google Scholar 

  35. Folch, P.J., Lees, M. & Sloane-Stanley, G.H. A simple method for the isolation and purification of total lipids from animal tissues. J. biol. Chem. 266, 497–505 (1957).

    Google Scholar 

  36. Skipski, V.P., Peterson, R.F. & Barkley, M. Quantitative analysis of phospholipids by thin-layer chromatography. J. Lipid Res. 90, 374–378 (1964).

    CAS  Google Scholar 

  37. Barlett, G.R. 1 Phosphorus assay in column chromatography. J. biol. Chem. 234, 466–468 (1959).

    Google Scholar 

  38. Lepage, G. & Roy, C.C. Direct transesterification of all classes of lipids in a one step reaction. J. Lipid Res. 27, 114–120 (1986).

    CAS  PubMed  Google Scholar 

  39. Carson, M. RIBBONS 2.0. J. appl. Cryst. 24, 958–961 (1991).

    Article  Google Scholar 

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Umland, T., Swaminathan, S., Singh, G. et al. Structure of a human Clara cell phospholipid-binding protein–ligand complex at 1. 9 Å resolution. Nat Struct Mol Biol 1, 538–545 (1994). https://doi.org/10.1038/nsb0894-538

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