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Crystal structure and reaction mechanism of 7,8-dihydroneopterin aldolase from staphylococcus aureus

Abstract

Dihydroneopterin aldolase catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin during the de novo synthesis of folk acid from guanosine triphosphate. The gene encoding the dihydroneopterin aldolase from S. aureus has been cloned, sequenced and expressed in Escherichia coli. The protein has been purified for biochemical characterization and its X-ray structure determined at 1.65 Å resolution. The protein forms an octamer of 110,000 M, molecular weight. Four molecules assemble into a ring, and two rings come together to give a cylinder with a hole of at least 13 Å diameter. The structure of the binary complex with the product 6-hydroxymethyl-7,8-dihydropterin has defined the location of the active site. The structural information and results of site directed mutagenesis allow an enzyme reaction mechanism to be proposed.

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References

  1. Blakley, R.L. & Appleman, J.R. In Chemistry and biology of pterins. (Walter de Gruyter & Co., Berlin, Germany; 1986).

    Google Scholar 

  2. Brown, K.A. & Kraut, J. 93, 217–224 (1992).

  3. Dale, G.E. et al. J. Mol. Biol. 266, 23–30 (1997).

    Article  CAS  Google Scholar 

  4. Seydel, J.K. J. Pharm. Sci. 57, 1455–1478 (1968).

    Article  CAS  Google Scholar 

  5. Shiota, T. & Israely, D. Biochem. Biophys. Acta. 52, 467–473 (1961).

    Article  CAS  Google Scholar 

  6. Shiota, T., Baugh, C.M., Jackson R. & Dillard R. Biochemistry 12, 5022–5028 (1969).

    Article  Google Scholar 

  7. Richey D.P. & Brown G.M. J Biol Chem 244, 1582–1592 (1969).

    CAS  PubMed  Google Scholar 

  8. Hampele, I.C. et al. J. Mol. Biol. 268, 21–30 (1997).

    Article  CAS  Google Scholar 

  9. Achari, A., et al. Nature Struct. Biol. 4, 490–497 (1997).

    Article  CAS  Google Scholar 

  10. Shiota, T. & Palumbo, M.P. J. Biol. Chem. 240, 4449–4453 (1965).

    CAS  PubMed  Google Scholar 

  11. Jones T.H. & Brown G.M. J. Biol. Chem. 242, 3989–3997 (1967).

    CAS  PubMed  Google Scholar 

  12. Mathis, J.B. & Brown, G.M. J. Biol. Chem. 245, 3015–3025 (1970).

    CAS  PubMed  Google Scholar 

  13. Zimmermann, M., Tolman, R.L., Morman, H., Graham, D.W. & Rogers, E.F. J. Med. Chem. 20, 1213–1215 (1977).

    Article  Google Scholar 

  14. Lopez, P., & Lacks, S.A. J. Bacteriol. 175, 2214–2220 (1993).

    Article  CAS  Google Scholar 

  15. Volpe F, Ballantine, S.P. & Delves, C.J. Eur. J. Biochem. 216, 449–458 (1993)

    Article  CAS  Google Scholar 

  16. Volpe, F., Ballantine, S.P. & Delves, C.J. Gene 160, 41–46 (1995).

    Article  CAS  Google Scholar 

  17. Slock, J., Stahly, D.P., Han, C-Y., Six, E.W. & Crawford, I.P. J. Bacteriol. 172, 7211–7226 (1990).

    Article  CAS  Google Scholar 

  18. Lopez, P., Greenberg, B. & Lacks, S.A. J. Bacteriol. 172, 4766–4774 (1990).

    Article  CAS  Google Scholar 

  19. Weiss, M.S., Wacker, T., Weckesser, J., Welte, W. & Schulz, G.E. FEBS Lett. 267, 268–272 (1990).

    Article  CAS  Google Scholar 

  20. Cowan, S.W. et al. Nature 358, 727–733 (1992).

    Article  CAS  Google Scholar 

  21. Nar, H., Huber, R., Heizmann, C.W., Thöny, B. & Bürgisser, D. EMBO J. 13, 1255–1262 (1994).

    Article  CAS  Google Scholar 

  22. Mathis, J.B. & Brown, G.M. Meths Enz. 66, 556–560 (1980).

    Article  CAS  Google Scholar 

  23. Gready, J.E. Biochemistry, 24, 4761–4766 (1985).

    Article  CAS  Google Scholar 

  24. Blakley, R.L., Appleman, J.R., Freisheim, J.H. & Jablonsky, M.J. Arch. Biochem. Biophys. 306, 501–509 (1993).

    Article  CAS  Google Scholar 

  25. Chen, Y.Q., Kraut, J., Blakley, R.L. & Callender, R. Biochemistry, 33, 7021–7026 (1994).

    Article  CAS  Google Scholar 

  26. Maharaj, G. et al. Biochemistry, 29, 4554–4560 (1990).

    Article  CAS  Google Scholar 

  27. Nar, H. et al. Proc. Natl. Acad. Sci. USA 92, 12120–12125 (1995).

    Article  CAS  Google Scholar 

  28. Stüber, D., Matile, H. & Garotta, G. In Immunological Methods (eds Lefkovits, I. & Pernis, B.) 121–152 (Academic Press, Orlando, Florida; 1990).

    Book  Google Scholar 

  29. Lopez, P., Espinosa, M., Greenberg, B. & Lacks, S.A. J. Bacteriol. 169, 4320–4326 (1987).

    Article  CAS  Google Scholar 

  30. Jancarik, J. & Kim, S.H. J. Appl. Crystallogr. 24, 409–411 (1991).

    Article  CAS  Google Scholar 

  31. McPherson, A. Preparation and analysis of protein crystals. (ed. Click, D.) (John Wiley & Sons Inc., New York; 1982).

    Google Scholar 

  32. SERC Collaborative Computational Project, Number 4: Acta Crystallogr. D 50, 760–763 (1994).

  33. Jones, T.A., Zou, J.-Y., Cowan, S.W. & Kjeldgaard, M. Acta Crystallogr. A 47, 110–119 (1991).

    Article  Google Scholar 

  34. Brünger, A.T. X-PLOR Version 3.1 (Yale University Press, New Haven, Connecticut; 1992).

    Google Scholar 

  35. Engh, R.A. & Huber, R. Acta Crystallogr. A 47, 392–400 (1991).

    Article  Google Scholar 

  36. Gerber, P.R. Biopolymers 32, 1003–1017 (1992).

    Article  CAS  Google Scholar 

  37. Kabsch, W. J. Appl. Crystallogr. 21, 916–924 (1988).

    Article  CAS  Google Scholar 

Download references

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Correspondence to Michael Hennig or Glenn E. Dale.

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Hennig, M., D′Arcy, A., Hampele, I. et al. Crystal structure and reaction mechanism of 7,8-dihydroneopterin aldolase from staphylococcus aureus. Nat Struct Mol Biol 5, 357–362 (1998). https://doi.org/10.1038/nsb0598-357

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