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Implications for viral uncoating from the structure of bovine enterovirus

Abstract

We have determined the crystal structure of a bovine enterovirus, revealing that the topologies of the major capsid proteins and the overall architecture of the virion are similar to those of related picornaviruses. The external loops joining β-strands are truncated and the canyon region is partially filled by an extension of the VP3 G–H loop giving the viral capsid a relatively smooth appearance. These changes may have implications for cell attachment. In spite of these differences the virus maintains a hydrophobic pocket within VP1, occupied by a specific ‘pocket factor’ which appears to be myristic acid. These observations support the proposal that a kinetic equilibrium exists between occupied and unoccupied pocket states, with occupation inhibiting uncoating.

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References

  1. Palmenberg, A.C. & Ehrenfeld, E. (ed.Semler,B.A.) 211–241 (American Society for Microbiology, Washington D.C; 1989).

  2. Rossmann, M.G. et al. Structure of a human common cold virus and functional relationship to other picornaviruses. Nature 317, 145–153 (1985).

    Article  CAS  Google Scholar 

  3. Hogle, J.M., Chow, M. & Filman, D.J. Three-dimensional structure of poliovirus at 2.9 Å resolution. Science 229, 1358–1365 (1985).

    Article  CAS  Google Scholar 

  4. Olson, N.H. et al. Structure of a human rhinovirus complexed with its receptor molecule. Proc. natn. Acad. Sci. U.S.A. 90, 507–511 (1993).

    Article  CAS  Google Scholar 

  5. Fillman, D.J. et al. Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus. EMBO J. 8, 1567–1579 (1989).

    Article  Google Scholar 

  6. Oliveira, M.A. et al. The structure of human rhinovirus 16. Structure 1, 51–68 (1993).

    Article  CAS  Google Scholar 

  7. Moll, T. & Davis, A.D. Isolation and characterisation of cytopathogenic enteroviruses from cattle with respiratory disease.Am. J. vet. Sci. 20, 27–32 (1959).

    CAS  Google Scholar 

  8. Martin, S.J., Johnson, M.D. & Clements, J.B. Purification and characterization of bovine enterovirus. J. gen. Virol. 7, 103–113 (1970).

    Article  CAS  Google Scholar 

  9. Kalter, S.S. Animal orphan enteroviruses. Bull. W. H. O. 22, 319–337 (1960).

    CAS  PubMed  Google Scholar 

  10. Acharya, R. et al. The three-dimensional structure of foot-and-mouth disease virus at 2.9 Å resolution. Nature 337, 709–716 (1989).

    Article  CAS  Google Scholar 

  11. Smyth, M., Hoey, E.M., Trudgett, A., Martin, S.J. & Brown, F. Chemically synthesised peptides elicit neutralizing antibody to bovine enterovirus. J. gen. Virol. 71, 231–234 (1990).

    Article  CAS  Google Scholar 

  12. Sherry, B., Mosser, A.G., Colonno, R.J. & Rueckert, R.R. Use of monoclonal antibodies to identify four neutralisation epiptopes on a common cold picornavirus, human rhinovirus 14. J. Virol. 57, 246–257 (1986).

    CAS  PubMed  PubMed Central  Google Scholar 

  13. Minor, P.D., Ferguson, M., Evans, D.M.A., Almond, J.W. & Icenogle, J.P. Antigenic structure of poliovirus serotypes 1, 2 and 3. J. gen. Virol. 67, 1283–1291 (1986).

    Article  CAS  Google Scholar 

  14. Arnold, E. & Rossmann, M.G. The use of molecular replacement phases for the refinement of the human rhinovirus 14 structure. Acta crystallogr. A44, 270–282 (1988).

    Article  CAS  Google Scholar 

  15. Kim, S. et al. Crystal structure of human rhinovirus serotype 1A (HRV1A). J. molec. Biol. 210, 91–111 (1989).

    Article  CAS  Google Scholar 

  16. Chow, M. et al. Myristylation of picornavirus capsid protein VP4 and its structural significance. Nature 327, 482–486 (1987).

    Article  CAS  Google Scholar 

  17. Lea, S. et al. The structure and antigenicity of a type C foot-and-mouth disease virus. Structure 2, 123–139 (1994).

    Article  CAS  Google Scholar 

  18. Colonno, R.J. et al. Evidence for the direct involvement of the rhinovirus canyon in receptor binding. Proc. natn. Acad. Sci. U.S.A. 85, 5449–5453 (1988).

    Article  CAS  Google Scholar 

  19. Kim, S. et al. Conformational variability of a picornavirus capsid: pH-dependent structural changes of mengo virus related to its host receptor attachment site and disassembly. Virology 175, 176–190 (1990).

    Article  CAS  Google Scholar 

  20. Logan, D. et al. Structure of a major immunogenic site on foot-and-mouth disease virus. Nature 362, 566–568 (1993).

    Article  CAS  Google Scholar 

  21. Smith, T.J. et al. The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating. Science 233, 1286–1293 (1986).

    Article  CAS  Google Scholar 

  22. Diana, G.D. et al. Anti-viral activity of beta-diketones. 1. Aryl alkyl diketones. In vitro activiy against both RNA and DMA viruses. J. med. Chem. 20, 750–756 (1977).

    Article  CAS  Google Scholar 

  23. Grant, R.A. et al. Structures of poliovirus complexes with antiviral drugs: implications for viral stability and drug design. Curr. Biol. 4, 784–797 (1994).

    Article  CAS  Google Scholar 

  24. Ismail-Cassim, N., Chezzi, C. & Newman, J.F.E. Inhibition of the uncoating of bovine enterovirus by short chain fatty acids. J. gen. Virol. 71, 2283–2289 (1990).

    Article  CAS  Google Scholar 

  25. Dorval, B.L., Chow, M. & Klibanov, A.M. Stabilization of poliovirus against heat inactivation. Biochem. biophys. res. commun. 159, 1177–1183 (1989).

    Article  CAS  Google Scholar 

  26. Fry, E. et al. in Protein Engineering (ed. Goodenough, P.) (CPL Press. 1992).

    Google Scholar 

  27. Symth, M. et al. Preliminary crystallographic analysis of bovine enterovirus. J. molec. Biol. 231, 930–932 (1993).

    Article  Google Scholar 

  28. Arnold, E. et al. Structure determination of a common cold virus, human rhinovirus 14. Acta crystallogr. A43, 346–361 (1987).

    Article  CAS  Google Scholar 

  29. Brunger, A.T. X-PLOR Version 3.0. (Yale University, New Haven, C.T. 1992).

    Google Scholar 

  30. Jones, T.A. Interactive computer graphics: FRODO. Meths Enzymol. 115, 157–171 (1985).

    Article  CAS  Google Scholar 

  31. Brunger, A.T., Krutowski, A. & Erickson, J. Slow cooling protocols for crystallographic refinement by simulated annealing. Acta crystallogr. A46, 585–593 (1990).

    Article  CAS  Google Scholar 

  32. Stuart, D.I., Levine, M., Muirhead, H. & Stammers, D.K. The crystal structure of cat private kinase at a resolution of 2.6 Å. J. molec Biol. 134, 109–142 (1979).

    Article  CAS  Google Scholar 

  33. Jones, T.A., Zou, Y.-J., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta crystallogr. A47, 110–119 (1991).

    Article  CAS  Google Scholar 

  34. Kraulis, P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. app. Crystallogr. 24, 946–950 (1991).

    Article  Google Scholar 

  35. Merritt, E.A. & Murphy, M.E.P. Raster 3D version 2.0. A program for photorealistic molecular graphics. Acta crystallogr. D50, 869–873 (1994).

    CAS  Google Scholar 

  36. Kabsch, W. & Sander, C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577–2637 (1983).

    Article  CAS  Google Scholar 

  37. Kleywegt, G.J. & Jones, T.A. Detection, delineation, measurement and display of cavities in macromolecular structures. Acta crystallogr. D50, 178–185 (1994).

    CAS  Google Scholar 

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Smyth, M., Tate, J., Hoey, E. et al. Implications for viral uncoating from the structure of bovine enterovirus. Nat Struct Mol Biol 2, 224–231 (1995). https://doi.org/10.1038/nsb0395-224

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