Abstract
Human ferrochelatase (E.C. 4.99.1.1) is a homodimeric (86 kDa) mitochondrial membrane-associated enzyme that catalyzes the insertion of ferrous iron into protoporphyrin to form heme. We have determined the 2.0 Å structure from the single wavelength iron anomalous scattering signal. The enzyme contains two NO-sensitive and uniquely coordinated [2Fe-2S] clusters. Its membrane association is mediated in part by a 12-residue hydrophobic lip that also forms the entrance to the active site pocket. The positioning of highly conserved residues in the active site in conjunction with previous biochemical studies support a catalytic model that may have significance in explaining the enzymatic defects that lead to the human inherited disease erythropoietic protoporphyria.
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References
Dailey, H.A. In Mechanism of metallocenter assembly (ed. Dailey, H.A.) 77–89 (VCH, New York; 1996).
Hansson, M. & Hederstedt, L. Eur J Biochem 220, 201–208 (1994).
Al-Karadaghi, S., Hansson, M., Nikonov, S., Jonsson, B. & Hederstedt, L. Structure 5, 1501–1510 (1997).
Dailey, H.A., Sellers, V.M. & Dailey, T.A. J. Biol. Chem. 269, 390–395 (1994).
Dailey, H.A. & Fleming, J.E. J. Biol. Chem. 258, 11453–11459 (1983).
Lavallee, D.K. In Mechanistic principles of enzyme activity (eds Liebman, J.F. & Greenberg, A.) 279–311 (VCH, New York; 1988).
Cochran, A.G. & Schultz, P.G. Science 249, 781–783 (1990).
Blackwood, M.E., Rush, T.S., Medlock, A., Dailey, H.A. & Spiro, T.G. J. Am. Chem. Soc. 119, 12170–12174 (1997).
Dailey, H.A. In Biosynthesis of heme and chlorophylls (ed. Dailey, H.A.) 123–161 (McGraw-Hill, New York; 1990).
Bonkowsky, H.L., Bloomer, J.R., Ebert, P.S. & Mahoney, M.J. J. Clin. Invest. 56, 1139–1148 (1975).
Nordmann, Y. & Deybach, J.C. In Biosynthesis of heme and chlorophylls (ed. Dailey, H.A.) 491–542 (McGraw-Hill, New York; 1990).
Crouse, B.R., Sellers, V.M., Finnegan, M.G., Dailey, H.A. & Johnson, M.K. Biochemistry 35, 16222–16229 (1996).
Sellers, V.M., Wang, K.F., Johnson, M.K. & Dailey, H.A. J. Biol. Chem. 273, 22311–22316 (1998).
Gora, M., Rytka, J. & Labbe-Bois, R. Arch. Biochem. Biophys. 361, 231–240 (1999).
Gora, M., Grzybowska, E., Rytka, J. & Labbe-Bois, R. J. Biol. Chem. 271, 11810–11816 (1996).
Lecerof, D., Fodje, M., Hansson, A., Hansson, M. & Al-Karadaghi, S. J. Mol. Biol. 297, 221–232 (2000).
Bain-Ackerman, M.J. & Laevellee, D.K. Inorg. Chem. 18, 3358–3364 (1979).
Burden, A.E. et al. Biochim. Biophys. Acta 1435, 191–197 (1999).
Otwinowski, Z. & Minor, W. Methods Enzymol. 276, 307–326 (1997).
Furey, W. & Swaminathan, S. Methods Enzymol. 277, 590–620 (1997).
Wang, B.C. Methods Enzymol. 115, 90–112 (1985).
Read, R.J. Acta Crystallogr. D 42, 140–149 (1986).
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard. Acta Crystallogr A 47, 110–119 (1991).
Perrakis, A., Morris R. & Lamzin V.S., Nature Struct. Biol. 6, 458–463 (1999).
Brunger, A.T. et al. Acta Crystallogr D 54, 905–921 (1998).
Ramakrishnan, C. & Ramachandran, G.N. Biophys. J. 5, 909–933 (1965).
Berman, H.M. . et al. Nucleic Acids Res. 28, 235–242 (2000).
Kraulis, P.J. J. Appl. Crystallogr. 24, 946–950 (1991).
Barton, G.J. Methods Enzymol. 183, 403–428 (1990).
Barton, G.J. Protein Eng. 6, 37–40 (1993).
Nicholls A., Sharp K.A. & Honig B. Proteins 11, 281–296 (1991).
Acknowledgements
We thank J. Ferrara and Molecular Structure Corporation, The Woodlands, Texas, for collecting the R-AXIS data, and M.K. Johnson for discussions concerning the cluster. This work was supported in part by a grant from the NIH to H.A.D., and funds from University of Georgia Research Foundation, and the Georgia Research Alliance to B.-C.W.
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Wu, CK., Dailey, H., Rose, J. et al. The 2.0 Å structure of human ferrochelatase, the terminal enzyme of heme biosynthesis. Nat Struct Mol Biol 8, 156–160 (2001). https://doi.org/10.1038/84152
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DOI: https://doi.org/10.1038/84152
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