Regulatory T (TReg) cells are commonly defined by their expression of the transcription factor forkhead box P3 (FOXP3), but some studies have questioned the stability of TReg cells and the lineage specificity of FOXP3. Human activated T cells can upregulate FOXP3 expression without acquiring a regulatory phenotype, and FOXP3+ cells can lose FOXP3 expression and acquire an effector cell phenotype during inflammation or lymphopenia. This study reconciles these controversies by proposing the existence of a minor population of FOXP3+ T cells that are not committed to the TReg cell lineage.

The authors generated mice in which the expression of red fluorescent protein (RFP) identifies FOXP3+ cells and their progeny irrespective of continued FOXP3 expression (Foxp3GFPCreROSA26RFP mice). In adult mice, 10–20% of RFP+CD4+ peripheral T cells (but not of RFP+CD4+ immature thymocytes) were FOXP3, showing that these cells had downregulated FOXP3 expression in the periphery. The RFP+FOXP3 (exFOXP3) T cells had an effector or memory phenotype, could produce diverse effector cytokines and expressed low levels of TReg cell markers.

These results are consistent with a model in which the instability of FOXP3+ cells does not represent 're-programming' of TReg cells

The authors also showed that when FOXP3 naive T cells were activated in vitro in the absence of transforming growth factor-β, 10% of the cells upregulated FOXP3 expression. However, these activation-induced FOXP3+ cells did not upregulate TReg cell signature genes, could not suppress T cell proliferation and did not maintain FOXP3 expression after re-stimulation. Together, the results confirm that FOXP3 expression in mouse T cells can be unstable.

Adoptive transfer experiments showed that peripherally induced FOXP3+ T cells can be separated into unstable and stable populations. FOXP3CD4+ T cells from mice expressing LY5.1 were first transferred into mice expressing LY5.2; after a period of 2–8 weeks, FOXP3+CD4+ T cells (a population consisting of endogenous LY5.2+ cells as well as LY5.1+ cells that had upregulated FOXP3 expression) were transferred from these mice into lymphopenic recipients. When analysed 4 weeks later, some of the LY5.1+ cells were FOXP3 and had proliferated extensively. The percentage of FOXP3LY5.1+ cells and the degree of population expansion inversely correlated with the length of time that the LY5.1+ cells were present in LY5.2+ mice. In other words, the stability of FOXP3 expression is related to the length of time for which it is expressed. The adoptive transfer of FOXP3+ thymocytes showed that thymus-induced peripheral FOXP3+ T cells have stable FOXP3 expression.

These findings indicate that FOXP3 stability depends on whether FOXP3 is induced in the thymus or the periphery. In keeping with this, a percentage of peripherally induced FOXP3+ T cells, but not of thymus-derived FOXP3+ T cells, lost FOXP3 expression and secreted effector cytokines when stimulated under appropriate polarizing conditions. Those peripherally induced FOXP3+ cells that lost FOXP3 expression were typically CD25−/low cells, whereas CD25hi peripherally induced FOXP3+ cells had stable FOXP3 expression. Together, the results show that FOXP3 expression is only unstable in a transient population of CD25−/low peripherally induced FOXP3+ cells. Furthermore, this population was shown to have defective suppressive activity.

Finally, the authors showed that 30% of exFOXP3 T cells can reacquire FOXP3 expression and suppressive activity following activation and that this ability correlates with a demethylated Foxp3 locus. By contrast, exFOXP3 cells with a methylated Foxp3 locus could not re-express FOXP3 and had an effector cell phenotype after activation.

These results are consistent with a model in which the instability of FOXP3+ cells does not represent 're-programming' of TReg cells, but rather a transient minor population of uncommitted FOXP3+ cells that do not have suppressive activity and can differentiate into FOXP3 effector cells. Although some TReg cells can lose FOXP3 expression, they retain an epigenetic memory of suppressive activity and cannot convert to effector cells; thus the authors refer to them as 'latent' TReg cells.