Abstract
OntoCAT provides high level abstraction for interacting with ontology resources including local ontology files in standard OWL and OBO formats (via OWL API) and public ontology repositories: EBI Ontology Lookup Service (OLS) and NCBO BioPortal. Each resource is wrapped behind easy to learn Java, Bioconductor/R and REST web service commands enabling reuse and integration of ontology software efforts despite variation in technologies.
Similar content being viewed by others
Article PDF
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Adamusiak, T., Kurbatova, N., Swertz, M. et al. OntoCAT - an integrated programming toolkit for common ontology application tasks. Nat Prec (2011). https://doi.org/10.1038/npre.2011.6121.1
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/npre.2011.6121.1