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The Teleost Taxonomy Ontology
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  • Published: 06 July 2010

iEvoBio - Informatics for Phylogenetics, Evolution, and Biodiversity

The Teleost Taxonomy Ontology

  • Peter Midford1,
  • James Balhoff2,
  • Wasila Dahdul3,
  • Cartik Kothari2,
  • Hilmar Lapp1,
  • John Lundberg4,
  • Paula Mabee5,
  • Todd Vision2 &
  • …
  • Monte Westerfield6 

Nature Precedings (2010)Cite this article

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Abstract

The Teleost Taxonomy Ontology (TTO) is an ontology of taxonomic groups and associated names for fish (not just teleosts). This ontology has served as a source of names and taxonomic structure within the Phenoscape project since early 2008. Although the TTO is based on Eschmeyer's Catalog of Fishes (CoF) and incorporates all valid species and genus names, it is also extended by the curation needs of the Phenoscape project. Names of fossil taxa not included in the CoF as well as references to specimens identi*ed only to genus (e.g., Eigenmannia sp. (Fink and Fink 1981)) are incorporated into the TTO as required by the curation needs of the Phenoscape project. As Phenoscape receives updates to the CoF, a tool called TTOUpdate merges the changes into the TTO.

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Authors and Affiliations

  1. National Evolutionary Synthesis Center https://www.nature.com/nature

    Peter Midford & Hilmar Lapp

  2. National Evolutionary Synthesis Center and University of North Carolina https://www.nature.com/nature

    James Balhoff, Cartik Kothari & Todd Vision

  3. National Evolutionary Synthesis Center and University of South Dakota https://www.nature.com/nature

    Wasila Dahdul

  4. Academy of Natural Sciences, Philadelpha PA https://www.nature.com/nature

    John Lundberg

  5. University of South Dakota, Vermillion SD https://www.nature.com/nature

    Paula Mabee

  6. Institute of Neuroscience, University of Oregon, Eugene, OR https://www.nature.com/nature

    Monte Westerfield

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  1. Peter Midford
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  2. James Balhoff
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  3. Wasila Dahdul
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  9. Monte Westerfield
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Corresponding author

Correspondence to Peter Midford.

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Midford, P., Balhoff, J., Dahdul, W. et al. The Teleost Taxonomy Ontology. Nat Prec (2010). https://doi.org/10.1038/npre.2010.4629.1

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  • Received: 06 July 2010

  • Accepted: 06 July 2010

  • Published: 06 July 2010

  • DOI: https://doi.org/10.1038/npre.2010.4629.1

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Keywords

  • iEvoBio
  • taxonomy
  • ontology

This article is cited by

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    Scientific Data (2022)

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