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SNPs matter: impact on detection of differential expression

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Figure 1: Acyp2 is an example of a false negative induced by SNPs.

References

  1. Frazer, K.A. et al. Genome Res. 14, 1493–1500 (2004).

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Acknowledgements

Supported by US National Institutes of Health grants AA010760, DA05228 and AA011114, and a Department of Veterans Affairs Merit Award.

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Supplementary Figures 1–2, Supplementary Tables 1–3, Supplementary Methods (PDF 221 kb)

Supplementary Data 1

SNP Mask file for the Affymetrix MOE 430 2.0 array (Mas 5.0 format) which incorporates all known SNPs between the B6 and D2 strains at the time of publication. (TXT 106 kb)

Supplementary Data 2

SNP Mask file for the Affymetrix MOE 430 2.0 array (RMA format) which incorporates all known SNPs between the B6 and D2 strains at the time of publication. (TXT 228 kb)

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Walter, N., McWeeney, S., Peters, S. et al. SNPs matter: impact on detection of differential expression. Nat Methods 4, 679–680 (2007). https://doi.org/10.1038/nmeth0907-679

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  • DOI: https://doi.org/10.1038/nmeth0907-679

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