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Taxonomic metagenome sequence assignment with structured output models

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Figure 1: Comparison of taxonomic classification methods.


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We thank T. Joachims for the SVMstruct implementation, L. Steinbrück and L. Feuerbach for software testing. K.R.P. and A.C.M. were funded by the Max Planck society and Heinrich Heine University Düsseldorf. T.S. acknowledges support from the German Science Foundation (Deutsche Forschungsgemeinschaft. P.J.T. is funded by US National Institutes of Health (P50 GM068763). The unpublished data for the WG-1 project was collected with support provided by the Office of the Chief Executive (OCE) Science team of Commonwealth Scientific and Industrial Research Organization Australia, in the form of an OCE postdoctoral fellowship (P.B.P.) and OCE Science Leader program (M.M.).

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Correspondence to Alice C McHardy.

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Patil, K., Haider, P., Pope, P. et al. Taxonomic metagenome sequence assignment with structured output models. Nat Methods 8, 191–192 (2011).

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