Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

This is a preview of subscription content

Access options

Buy article

Get time limited or full article access on ReadCube.

$32.00

All prices are NET prices.

Figure 1: PSICQUIC and PSISCORE architecture.

References

  1. Hermjakob, H. et al. Nat. Biotechnol. 22, 177–183 (2004).

    CAS  Article  Google Scholar 

  2. Kerrien, S. et al. BMC Biol. 5, 44 (2007).

    Article  Google Scholar 

  3. Shannon, P. et al. Genome Res. 13, 2498–2504 (2003).

    CAS  Article  Google Scholar 

  4. Blankenburg, H. et al. Bioinformatics 25, 1321–1328 (2009).

    CAS  Article  Google Scholar 

  5. Orchard, S. et al. Proteomics 7, 3436–3440 (2007).

    CAS  Article  Google Scholar 

Download references

Acknowledgements

This study was supported by the European Commission under the Serving Life-science Information for the Next Generation contract 226073; Proteomics Standards Initiative and International Molecular Exchange contract FP7-HEALTH-2007-223411; Apoptosis Systems Biology Applied to Cancer and AIDS contract FP7-HEALTH-2007-200767; Experimental Network for Functional Integration contract LSHG-CT-2005-518254; German National Genome Research Network; German Research Foundation contract KFO 129/1-2; US National Institutes of Health grant R01GM071909; the Italian Association for Cancer Research; a Wellcome Trust Strategic Award to the European Molecular Biology Laboratory–European Bioinformatics Institute for Chemogenomics Databases; Grand Challenges in Global Health Research, the Canadian Institutes of Health Research, Foundation for the National Institutes of Health and Genome British Columbia; and a German Research Foundation–funded Cluster of Excellence for Multimodal Computing and Interaction. We thank organizers and sponsors of the Biohackathons 2008, 2009 and 2010 where part of the work was done.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bruno Aranda.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Supplementary information

Supplementary Text and Figures

Supplementary Table 1, Supplementary Notes 1–3 (PDF 2245 kb)

Rights and permissions

Reprints and Permissions

About this article

Cite this article

Aranda, B., Blankenburg, H., Kerrien, S. et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods 8, 528–529 (2011). https://doi.org/10.1038/nmeth.1637

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nmeth.1637

Further reading

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing