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Metabolism

Digging up enzyme functions

Advances in genome sequencing and structural biology mean that we are now buried under an avalanche of predicted domains and structures of proteins with unknown functions. Two groups have used different methods to unearth the functions of previously cryptic bacterial enzymes, illuminating new reactions and metabolic pathways.

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Figure 1: Discovery of missing enzymes and new metabolic pathways.

References

  1. Bastard, K. et al. Nat. Chem. Biol. 10.1038/nchembio.1387 (20 November 2013).

  2. Zhao, S. et al. Nature 502, 698–702 (2013).

    Article  CAS  Google Scholar 

  3. Schnoes, A.M. et al. PLoS Comput. Biol. 105, e1000605 (2009).

    Article  Google Scholar 

  4. Kreimeyer, A. et al. J. Biol. Chem. 282, 7191–7197 (2007).

    Article  CAS  Google Scholar 

  5. de Melo-Minardi, R.C. et al. Bioinformatics 26, 3075–3082 (2010).

    Article  CAS  Google Scholar 

  6. Wang, Q. et al. Science 327, 1004–1007 (2010).

    Article  CAS  Google Scholar 

  7. Kapfhammer, D., Yarbrough, M.L., Orth, K. & Grishin, N.V. et al. Appl. Environ. Microbiol 71, 3840–3847 (2005).

    Article  CAS  Google Scholar 

  8. Wargo, M.J. et al. Infect. Immun. 77, 1103–1111 (2009).

    Article  CAS  Google Scholar 

  9. Fitzsimmons, L.F. et al. J. Bacteriol. 194, 4718–4726 (2012).

    Article  CAS  Google Scholar 

  10. Smith, L.T.. et al. J. Bacteriol. 170, 3142–3149 (1988).

    Article  CAS  Google Scholar 

Download references

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Correspondence to Matthew J Wargo.

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Wargo, M. Digging up enzyme functions. Nat Chem Biol 10, 4–5 (2014). https://doi.org/10.1038/nchembio.1413

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