Abstract
Wnts are secreted palmitoylated glycoproteins that are important in embryonic development and human cancers. Here we report a method for imaging the palmitoylated form of Wnt proteins with subcellular resolution using clickable bioorthogonal fatty acids and in situ proximity ligation. Palmitoylated Wnt3a is visualized throughout the secretory pathway and trafficks to multivesicular bodies that act as export sites in secretory cells. We establish that glycosylation is not required for Wnt3a palmitoylation, which is necessary but not sufficient for Wnt3a secretion. Wnt3a is palmitoylated by fatty acids 13–16 carbons in length at Ser209 but not at Cys77, consistent with a slow turnover rate. We find that porcupine (PORCN) itself is palmitoylated, demonstrating what is to our knowledge the first example of palmitoylation of an MBOAT protein, and this modification partially regulates Wnt palmitoylation and signaling. Our data reveal the role of O-palmitoylation in Wnt signaling and suggest another layer of cellular control over PORCN function and Wnt secretion.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
Resh, M.D. Fatty acylation of proteins: new insights into membrane targeting of myristoylated and palmitoylated proteins. Biochim. Biophys. Acta 1451, 1–16 (1999).
Steinhauer, J. & Treisman, J.E. Lipid-modified morphogens: functions of fats. Curr. Opin. Genet. Dev. 19, 308–314 (2009).
Salaun, C., Greaves, J. & Chamberlain, L.H. The intracellular dynamic of protein palmitoylation. J. Cell Biol. 191, 1229–1238 (2010).
Hannoush, R.N. & Sun, J. The chemical toolbox for monitoring protein fatty acylation and prenylation. Nat. Chem. Biol. 6, 498–506 (2010).
Hannoush, R.N. & Arenas-Ramirez, N. Imaging the lipidome: ω-alkynyl fatty acids for detection and cellular visualization of lipid-modified proteins. ACS Chem. Biol. 4, 581–587 (2009).
Yap, M.C. et al. Rapid and selective detection of fatty acylated proteins using ω-alkynyl-fatty acids and click chemistry. J. Lipid Res. 51, 1566–1580 (2010).
Nusse, R. Wnts and Hedgehogs: lipid-modified proteins and similarities in signaling mechanisms at the cell surface. Development 130, 5297–5305 (2003).
Willert, K. et al. Wnt proteins are lipid-modified and can act as stem cell growth factors. Nature 423, 448–452 (2003).
Clevers, H. & Nusse, R. Wnt/β-catenin signaling and disease. Cell 149, 1192–1205 (2012).
Polakis, P. The many ways of Wnt in cancer. Curr. Opin. Genet. Dev. 17, 45–51 (2007).
Augustin, I. et al. The Wnt secretion protein Evi/Gpr177 promotes glioma tumourigenesis. EMBO Mol. Med. 4, 38–51 (2012).
Yang, P.T. et al. WLS inhibits melanoma cell proliferation through the β-catenin signalling pathway and induces spontaneous metastasis. EMBO Mol. Med. 4, 1294–1307 (2012).
Smolich, B.D., McMahon, J.A., McMahon, A.P. & Papkoff, J. Wnt family proteins are secreted and associated with the cell surface. Mol. Biol. Cell 4, 1267–1275 (1993).
Komekado, H., Yamamoto, H., Chiba, T. & Kikuchi, A. Glycosylation and palmitoylation of Wnt-3a are coupled to produce an active form of Wnt-3a. Genes Cells 12, 521–534 (2007).
Tang, X. et al. Roles of N-glycosylation and lipidation in Wg secretion and signaling. Dev. Biol. 364, 32–41 (2012).
Takada, R. et al. Monounsaturated fatty acid modification of Wnt protein: its role in Wnt secretion. Dev. Cell 11, 791–801 (2006).
Janda, C.Y., Waghray, D., Levin, A.M., Thomas, C. & Garcia, K.C. Structural basis of Wnt recognition by Frizzled. Science 337, 59–64 (2012).
Willert, K. & Nusse, R. Wnt proteins. Cold Spring Harb. Perspect. Biol. 4, a007864 (2012).
Zhai, L., Chaturvedi, D. & Cumberledge, S. Drosophila wnt-1 undergoes a hydrophobic modification and is targeted to lipid rafts, a process that requires porcupine. J. Biol. Chem. 279, 33220–33227 (2004).
Gao, X., Arenas-Ramirez, N., Scales, S.J. & Hannoush, R.N. Membrane targeting of palmitoylated Wnt and Hedgehog revealed by chemical probes. FEBS Lett. 585, 2501–2506 (2011).
Caricasole, A., Ferraro, T., Rimland, J.M. & Terstappen, G.C. Molecular cloning and initial characterization of the MG61/PORC gene, the human homologue of the Drosophila segment polarity gene Porcupine. Gene 288, 147–157 (2002).
Galli, L.M. & Burrus, L.W. Differential palmit(e)oylation of Wnt1 on C93 and S224 residues has overlapping and distinct consequences. PLoS ONE 6, e26636 (2011).
Galli, L.M., Barnes, T.L., Secrest, S.S., Kadowaki, T. & Burrus, L.W. Porcupine-mediated lipid-modification regulates the activity and distribution of Wnt proteins in the chick neural tube. Development 134, 3339–3348 (2007).
Herr, P. & Basler, K. Porcupine-mediated lipidation is required for Wnt recognition by Wls. Dev. Biol. 361, 392–402 (2012).
Najdi, R. et al. A uniform human Wnt expression library reveals a shared secretory pathway and unique signaling activities. Differentiation 84, 203–213 (2012).
Hofmann, K. A superfamily of membrane-bound O-acyltransferases with implications for wnt signaling. Trends Biochem. Sci. 25, 111–112 (2000).
Tanaka, K., Okabayashi, K., Asashima, M., Perrimon, N. & Kadowaki, T. The evolutionarily conserved porcupine gene family is involved in the processing of the Wnt family. Eur. J. Biochem. 267, 4300–4311 (2000).
Kadowaki, T., Wilder, E., Klingensmith, J., Zachary, K. & Perrimon, N. The segment polarity gene porcupine encodes a putative multitransmembrane protein involved in Wingless processing. Genes Dev. 10, 3116–3128 (1996).
Wang, X. et al. Mutations in X-linked PORCN, a putative regulator of Wnt signaling, cause focal dermal hypoplasia. Nat. Genet. 39, 836–838 (2007).
Grzeschik, K.H. et al. Deficiency of PORCN, a regulator of Wnt signaling, is associated with focal dermal hypoplasia. Nat. Genet. 39, 833–835 (2007).
Proffitt, K.D. et al. Pharmacological inhibition of the Wnt acyltransferase PORCN prevents growth of WNT-driven mammary cancer. Cancer Res. 73, 502–507 (2013).
Söderberg, O. et al. Direct observation of individual endogenous protein complexes in situ by proximity ligation. Nat. Methods 3, 995–1000 (2006).
Chen, B. et al. Small molecule–mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer. Nat. Chem. Biol. 5, 100–107 (2009).
Presley, J.F. et al. ER-to-Golgi transport visualized in living cells. Nature 389, 81–85 (1997).
Escola, J.M. et al. Selective enrichment of tetraspan proteins on the internal vesicles of multivesicular endosomes and on exosomes secreted by human B-lymphocytes. J. Biol. Chem. 273, 20121–20127 (1998).
Stoorvogel, W., Kleijmeer, M.J., Geuze, H.J. & Raposo, G. The biogenesis and functions of exosomes. Traffic 3, 321–330 (2002).
Théry, C., Zitvogel, L. & Amigorena, S. Exosomes: composition, biogenesis and function. Nat. Rev. Immunol. 2, 569–579 (2002).
Patterson, S.I. & Skene, J.H. Inhibition of dynamic protein palmitoylation in intact cells with tunicamycin. Methods Enzymol. 250, 284–300 (1995).
Magee, A.I., Gutierrez, L., McKay, I.A., Marshall, C.J. & Hall, A. Dynamic fatty acylation of p21N-ras. EMBO J. 6, 3353–3357 (1987).
Staufenbiel, M. Ankyrin-bound fatty acid turns over rapidly at the erythrocyte plasma membrane. Mol. Cell. Biol. 7, 2981–2984 (1987).
Schweizer, A., Kornfeld, S. & Rohrer, J. Cysteine 34 of the cytoplasmic tail of the cation-dependent mannose 6-phosphate receptor is reversibly palmitoylated and required for normal trafficking and lysosomal enzyme sorting. J. Cell Biol. 132, 577–584 (1996).
Omary, M.B. & Trowbridge, I. Biosynthesis of the human transferrin receptor. J. Biol. Chem. 256, 12888–12892 (1981).
Gross, J.C., Chaudhary, V., Bartscherer, K. & Boutros, M. Active Wnt proteins are secreted on exosomes. Nat. Cell Biol. 14, 1036–1045 (2012).
Beckett, K. et al. Drosophila S2 cells secrete wingless on exosome-like vesicles but the wingless gradient forms independently of exosomes. Traffic 14, 82–96 (2013).
Bilic, J. et al. Wnt induces LRP6 signalosomes and promotes Dishevelled-dependent LRP6 phosphorylation. Science 316, 1619–1622 (2007).
Taelman, V.F. et al. Wnt signaling requires sequestration of glycogen synthase kinase 3 inside multivesicular endosomes. Cell 143, 1136–1148 (2010).
Fritz, V. et al. Abrogation of de novo lipogenesis by stearoyl-CoA desaturase 1 inhibition interferes with oncogenic signaling and blocks prostate cancer progression in mice. Mol. Cancer Ther. 9, 1740–1754 (2010).
Covey, T.M. et al. PORCN moonlights in a Wnt-independent pathway that regulates cancer cell proliferation. PLoS ONE 7, e34532 (2012).
Proffitt, K.D. & Virshup, D.M. Precise regulation of porcupine activity is required for physiological Wnt signaling. J. Biol. Chem. 287, 34167–34178 (2012).
Bornholdt, D. et al. PORCN mutations in focal dermal hypoplasia: coping with lethality. Hum. Mutat. 30, E618–E628 (2009).
Zhang, Y. et al. Inhibition of Wnt signaling by Dishevelled PDZ peptides. Nat. Chem. Biol. 5, 217–219 (2009).
Gong, Y. et al. Wnt isoform-specific interactions with coreceptor specify inhibition or potentiation of signaling by LRP6 antibodies. PLoS ONE 5, e12682 (2010).
Acknowledgements
We would like to thank S. Scales for valuable comments on the manuscript and former members of the Hannoush lab for helpful discussions. We acknowledge use of microscopes at the Center for Advanced Light Microscopy at Genentech.
Author information
Authors and Affiliations
Contributions
X.G. and R.N.H. designed research. X.G. performed experiments. X.G. and R.N.H. analyzed data and wrote the paper. R.N.H. conceived of and guided the study.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Supplementary information
Supplementary Text and Figures
Supplementary Results and Supplementary Figures 1–30. (PDF 6008 kb)
Rights and permissions
About this article
Cite this article
Gao, X., Hannoush, R. Single-cell imaging of Wnt palmitoylation by the acyltransferase porcupine. Nat Chem Biol 10, 61–68 (2014). https://doi.org/10.1038/nchembio.1392
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/nchembio.1392
This article is cited by
-
Therapeutic blood-brain barrier modulation and stroke treatment by a bioengineered FZD4-selective WNT surrogate in mice
Nature Communications (2023)
-
ACSL5, a prognostic factor in acute myeloid leukemia, modulates the activity of Wnt/β-catenin signaling by palmitoylation modification
Frontiers of Medicine (2023)
-
Wnt/β-catenin signaling in cancers and targeted therapies
Signal Transduction and Targeted Therapy (2021)
-
Insulin activates hepatic Wnt/β-catenin signaling through stearoyl-CoA desaturase 1 and Porcupine
Scientific Reports (2020)
-
Inhibiting PD-L1 palmitoylation enhances T-cell immune responses against tumours
Nature Biomedical Engineering (2019)