Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Original Article
  • Published:

A high-throughput screening for mammalian cell death effectors identifies the mitochondrial phosphate carrier as a regulator of cytochrome c release

Abstract

Functional annotation of complex genomes requires the development of novel experimental platforms with increased capacity. Here, we describe a high-throughput system designed to identify cDNAs whose overexpression induces morphologically distinct cell death modalities. The methodology incorporates two robotized steps, and relies on coexpression of library clones with GFP to reveal the morphological features presented by the dying cells. By using this system we screened 135 000 cDNA clones and obtained 90 independent molecules. Interestingly, three death categories were identified, namely; apoptotic, vacuolated and autophagic. Among the pro-apoptotic clones, we found four members of the mitochondrial carrier family: the phosphate and adenine nucleotide (type 3) transporters, and the mitochondrial carrier homologs (MTCHs) 1 and 2. Expression of these molecules induced cytochrome c release and caspase-9-dependent death. One of them, the phosphate carrier, was able to interact with members of the permeability transition pore complex ANT1 and VDAC1, and its binding to ANT1 was stabilized in the presence of apoptotic activators. Depletion of this carrier by siRNA delayed cytochrome c mobilization and apoptosis. These results attribute a previously undescribed apoptotic function to the phosphate carrier and, more generally, suggest that a common property of various mitochondrial transporters was exploited during evolution to regulate apoptosis.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1
Figure 2
Figure 3
Figure 4
Figure 5
Figure 6
Figure 7

Similar content being viewed by others

Abbreviations

PARP:

poly(ADP-ribose) polymerase

PI:

propidium iodide

STS:

staurosporine

References

  • Albayrak T, Grimm S . (2003). A high-throughput screen for single gene activities: isolation of apoptosis inducers. Biochem Biophys Res Commun 304: 772–776.

    Article  CAS  Google Scholar 

  • Bauer MK, Schubert A, Rocks O, Grimm S . (1999). Adenine nucleotide translocase-1, a component of the permeability transition pore, can dominantly induce apoptosis. J Cell Biol 147: 1493–1502.

    Article  CAS  Google Scholar 

  • Brenner C, Grimm S . (2006). The permeability transition pore complex in cancer cell death. Oncogene 25: 4744–4756.

    Article  CAS  Google Scholar 

  • Broker LE, Kruyt FA, Giaccone G . (2005). Cell death independent of caspases: a review. Clin Cancer Res 11: 3155–3162.

    Article  Google Scholar 

  • Chanda SK, White S, Orth AP, Reisdorph R, Miraglia L, Thomas RS et al. (2003). Genome-scale functional profiling of the mammalian AP-1 signaling pathway. Proc Natl Acad Sci USA 100: 12153–12158.

    Article  CAS  Google Scholar 

  • Crompton M, Barksby E, Johnson N, Capano M . (2002). Mitochondrial intermembrane junctional complexes and their involvement in cell death. Biochimie 84: 143–152.

    Article  CAS  Google Scholar 

  • Faustin B, Rossignol R, Rocher C, Benard G, Malgat M, Letellier T . (2004). Mobilization of adenine nucleotide translocators as molecular bases of the biochemical threshold effect observed in mitochondrial diseases. J Biol Chem 279: 20411–20421.

    Article  CAS  Google Scholar 

  • Garrido C, Galluzzi L, Brunet M, Puig PE, Didelot C, Kroemer G . (2006). Mechanisms of cytochrome c release from mitochondria. Cell Death Differ 13: 1423–1433.

    Article  CAS  Google Scholar 

  • Green DR, Reed JC . (1998). Mitochondria and apoptosis. Science 281: 1309–1312.

    Article  CAS  Google Scholar 

  • Grimm S . (2004). The art and design of genetic screens: mammalian culture cells. Nat Rev Genet 5: 179–189.

    Article  CAS  Google Scholar 

  • Grinberg M, Schwarz M, Zaltsman Y, Eini T, Niv H, Pietrokovski S et al. (2005). Mitochondrial carrier homolog 2 is a target of tBID in cells signaled to die by tumor necrosis factor alpha. Mol Cell Biol 25: 4579–4590.

    Article  CAS  Google Scholar 

  • Halestrap AP . (2004). Mitochondrial permeability: dual role for the ADP/ATP translocator? Nature 430: 1p following 983.

    Article  Google Scholar 

  • Inbal B, Bialik S, Sabanay I, Shani G, Kimchi A . (2002). DAP kinase and DRP-1 mediate membrane blebbing and the formation of autophagic vesicles during programmed cell death. J Cell Biol 157: 455–468.

    Article  CAS  Google Scholar 

  • Kanzawa T, Zhang L, Xiao L, Germano IM, Kondo Y, Kondo S . (2005). Arsenic trioxide induces autophagic cell death in malignant glioma cells by upregulation of mitochondrial cell death protein BNIP3. Oncogene 24: 980–991.

    Article  CAS  Google Scholar 

  • Kiss-Toth E, Qwarnstrom EE, Dower SK . (2004). Hunting for genes by functional screens. Cytokine Growth Factor Rev 15: 97–102.

    Article  CAS  Google Scholar 

  • Klee M, Pimentel-Muiños FX . (2005). Bcl-X(L) specifically activates Bak to induce swelling and restructuring of the endoplasmic reticulum. J Cell Biol 168: 723–734.

    Article  CAS  Google Scholar 

  • Ko YH, Delannoy M, Hullihen J, Chiu W, Pedersen PL . (2003). Mitochondrial ATP synthasome. Cristae-enriched membranes and a multiwell detergent screening assay yield dispersed single complexes containing the ATP synthase and carriers for Pi and ADP/ATP. J Biol Chem 278: 12305–12309.

    Article  CAS  Google Scholar 

  • Kokoszka JE, Waymire KG, Levy SE, Sligh JE, Cai J, Jones DP et al. (2004). The ADP/ATP translocator is not essential for the mitochondrial permeability transition pore. Nature 427: 461–465.

    Article  CAS  Google Scholar 

  • Matsuda A, Suzuki Y, Honda G, Muramatsu S, Matsuzaki O, Nagano Y et al. (2003). Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. Oncogene 22: 3307–3318.

    Article  CAS  Google Scholar 

  • Mizushima N . (2004). Methods for monitoring autophagy. Int J Biochem Cell Biol 36: 2491–2502.

    Article  CAS  Google Scholar 

  • Palmieri F . (2004). The mitochondrial transporter family (SLC25): physiological and pathological implications. Pflugers Arch 447: 689–709.

    Article  CAS  Google Scholar 

  • Pimentel-Muiños FX, Seed B . (1999). Regulated commitment of TNF receptor signaling: a molecular switch for death or activation. Immunity 11: 783–793.

    Article  Google Scholar 

  • Poncet D, Pauleau AL, Szabadkai G, Vozza A, Scholz SR, Le Bras M et al. (2006). Cytopathic effects of the cytomegalovirus-encoded apoptosis inhibitory protein vMIA. J Cell Biol 174: 985–996.

    Article  CAS  Google Scholar 

  • Schobel S, Neumann S, Seed B, Lichtenthaler SF . (2006). Expression cloning screen for modifiers of amyloid precursor protein shedding. Int J Dev Neurosci 24: 141–148.

    Article  Google Scholar 

  • Schubert A, Grimm S . (2004). Cyclophilin D, a component of the permeability transition-pore, is an apoptosis repressor. Cancer Res 64: 85–93.

    Article  CAS  Google Scholar 

  • Shimizu S, Kanaseki T, Mizushima N, Mizuta T, Arakawa-Kobayashi S, Thompson CB et al. (2004). Role of Bcl-2 family proteins in a non-apoptotic programmed cell death dependent on autophagy genes. Nat Cell Biol 6: 1221–1228.

    Article  CAS  Google Scholar 

  • Sperandio S, de Belle I, Bredesen DE . (2000). An alternative, nonapoptotic form of programmed cell death. Proc Natl Acad Sci USA 97: 14376–14381.

    Article  CAS  Google Scholar 

  • Ting A, Lichtenthaler S, Xavier R, Na SY, Rabizadeh S, Holmes T et al. (2005). Large-scale screens for cDNAs with in vivo activity. Novartis Found Symp 267: 219–229 discussion 229–230.

    CAS  PubMed  Google Scholar 

  • Van Cruchten S, Van Den Broeck W . (2002). Morphological and biochemical aspects of apoptosis, oncosis and necrosis. Anat Histol Embryol 31: 214–223.

    Article  CAS  Google Scholar 

  • Verrier F, Deniaud A, Lebras M, Metivier D, Kroemer G, Mignotte B et al. (2004). Dynamic evolution of the adenine nucleotide translocase interactome during chemotherapy-induced apoptosis. Oncogene 23: 8049–8064.

    Article  CAS  Google Scholar 

  • Xu X, Shi YC, Gao W, Mao G, Zhao G, Agrawal S et al. (2002). The novel presenilin-1-associated protein is a proapoptotic mitochondrial protein. J Biol Chem 277: 48913–48922.

    Article  CAS  Google Scholar 

  • Yerushalmi GM, Leibowitz-Amit R, Shaharabany M, Tsarfaty I . (2002). Met-HGF/SF signal transduction induces mimp, a novel mitochondrial carrier homologue, which leads to mitochondrial depolarization. Neoplasia 4: 510–522.

    Article  CAS  Google Scholar 

  • Zamora M, Granell M, Mampel T, Vinas O . (2004). Adenine nucleotide translocase 3 (ANT-3) overexpression induces apoptosis in cultured cells. FEBS Lett 563: 155–160.

    Article  CAS  Google Scholar 

  • Zamzami N, Kroemer G . (2001). The mitochondrion in apoptosis: how Pandora's box opens. Nat Rev Mol Cell Biol 2: 67–71.

    Article  CAS  Google Scholar 

  • Zoratti M, Szabo I, De Marchi U . (2005). Mitochondrial permeability transitions: how many doors to the house? Biochim Biophys Acta 1706: 40–52.

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank Dr Brian Seed, in whose laboratory this work was initiated, Dr Atan Gross for the Ab3 anti-MTCH2 antibody, Dr Richard Mulligan for the pMMP, pMD-G and pMD-gag-pol vectors, Dr Felix Randow for P12-MMP, Dr Ute Moll for the LF-OTC-flag construct and CIC members for support. This work was funded by Grants SAF2002-00193, SAF2005-01208 and GEN2003-20239-C06-05 from the Spanish MEC. Additional funding came from the FEDER program of the European Union. SA, MK and JF hold predoctoral fellowships from the Junta de Castilla y León (SA) or the FPU program of the Spanish Government (MK and JF). AF holds a long-term EMBO postdoctoral fellowship. FXP is an investigator affiliated to the University of Salamanca and funded by the Ramón y Cajal program (Spanish Government).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to F X Pimentel-Muiños.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Alcalá, S., Klee, M., Fernández, J. et al. A high-throughput screening for mammalian cell death effectors identifies the mitochondrial phosphate carrier as a regulator of cytochrome c release. Oncogene 27, 44–54 (2008). https://doi.org/10.1038/sj.onc.1210600

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/sj.onc.1210600

Keywords

This article is cited by

Search

Quick links