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Open Access
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Perspective |
Biogeochemistry of Earth before exoenzymes
Exoenzymes produced by heterotrophic microorganisms early in Earth history helped unlock previously unavailable organic matter and transformed ocean geochemistry.
- Nagissa Mahmoudi
- , Andrew D. Steen
- & Kurt O. Konhauser
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Perspective |
Formation of necromass-derived soil organic carbon determined by microbial death pathways
Microbial death pathways affect the quantity and composition of microbial necromass and its associated soil organic carbon.
- Tessa Camenzind
- , Kyle Mason-Jones
- & Johannes Lehmann
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Editorial |
Phytoplankton in the middle
Marine phytoplankton both follow and actively influence the environment they inhabit. Unpacking the complex ecological and biogeochemical roles of these tiny organisms can help reveal the workings of the Earth system.
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Article
| Open AccessLimited carbon cycling due to high-pressure effects on the deep-sea microbiome
In situ measurements reveal that high pressure in the deep ocean doesn’t lead to elevated community-level microbial metabolic rates, in contrast to previous shipboard analyses made at atmospheric pressure.
- Chie Amano
- , Zihao Zhao
- & Gerhard J. Herndl
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Article
| Open AccessGlobal patterns in marine organic matter stoichiometry driven by phytoplankton ecophysiology
Ecosystem modelling suggests that a range of growth conditions and ecological selection of phytoplankton explain global patterns of C:N:P ratios in marine organic matter.
- Keisuke Inomura
- , Curtis Deutsch
- & Michael J. Follows
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Article
| Open AccessCarbon fixation rates in groundwater similar to those in oligotrophic marine systems
Direct measurements of carbon fixation rates in groundwater suggest a substantial contribution of in situ primary production to subsurface ecosystem processes.
- Will A. Overholt
- , Susan Trumbore
- & Kirsten Küsel
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Article
| Open AccessPossible link between Earth’s rotation rate and oxygenation
Rotational deceleration has increased daylength on Earth, potentially linking the increased burial of organic carbon by cyanobacterial mats and planetary oxygenation, according to experiments and modelling of Precambrian benthic ecosystems.
- J. M. Klatt
- , A. Chennu
- & G. J. Dick
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Article |
Effect of tectonic processes on biosphere–geosphere feedbacks across a convergent margin
The subsurface biosphere across a convergent margin may reflect tectonic processes and reduce carbon transfer to the mantle, according to bacterial and geochemical correlations from hot springs across the Costa Rican margin.
- Katherine M. Fullerton
- , Matthew O. Schrenk
- & Karen G. Lloyd
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Article |
Impaired viral infection and reduced mortality of diatoms in iron-limited oceanic regions
Diatoms are less susceptible to viral infection in iron-limited oceans, according to metatranscriptomic analyses of diatoms and viruses in nutrient-replete and limited regions.
- Chana F. Kranzler
- , Mark A. Brzezinski
- & Kimberlee Thamatrakoln
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Article |
Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations
Carbon dioxide emissions from permafrost thaw are substantially enhanced by relieving microbial functional limitations, according to incubation experiments on Yedoma permafrost.
- Sylvain Monteux
- , Frida Keuper
- & Ellen Dorrepaal
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Article |
Persistence of dissolved organic matter explained by molecular changes during its passage through soil
Dissolved organic matter is persistent in soil owing to continuous consumption and transformation rather than owing to its recalcitrant molecular properties, according to analyses of molecular changes of dissolved organic matter as it passes through soil.
- Vanessa-Nina Roth
- , Markus Lange
- & Gerd Gleixner
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Review Article |
The biomass and biodiversity of the continental subsurface
The abundance of microorganisms in the continental subsurface may have been overestimated, according to a review compilation of data from subsurface localities around the globe.
- C. Magnabosco
- , L.-H. Lin
- & T. C. Onstott
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Article |
The role of microbes in snowmelt and radiative forcing on an Alaskan icefield
Microbes on glacial snow and ice reduce albedo and increase melting. Field experiments show that nutrient and meltwater additions increase microbial abundance and that areas of microbe-covered snow generate increased snowmelt.
- Gerard Q. Ganey
- , Michael G. Loso
- & Roman J. Dial
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Review Article |
Metal availability and the expanding network of microbial metabolisms in the Archaean eon
Microbial metabolisms depend on enzymes that contain trace metals. A synthesis of molecular and geochemical data shows that these metabolic pathways evolved alongside changing marine availability of trace metals during the Precambrian.
- Eli K. Moore
- , Benjamin I. Jelen
- & Paul G. Falkowski
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Article |
Microbial oxidation as a methane sink beneath the West Antarctic Ice Sheet
Subglacial lakes contain active microbial ecosystems capable of cycling methane. In a subglacial lake in West Antarctica, methane that is produced is subsequently consumed, limiting the potential for methane emissions during lake drainage.
- Alexander B. Michaud
- , John E. Dore
- & John C. Priscu
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Article |
Microbial substrate preference dictated by energy demand rather than supply
Microbes are expected to prefer substrates with the highest energy yield. Laboratory experiments demonstrate that a metabolically flexible archaeon exhibits preference for and greater growth from lower energy substrates.
- Maximiliano J. Amenabar
- , Everett L. Shock
- & Eric S. Boyd
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Article |
Microbially driven export of labile organic carbon from the Greenland ice sheet
Glacial systems are important sources of dissolved organic carbon to downstream ecosystems. Observations of carbon dynamics on the Greenland ice sheet reveal substantial melt season production and export of microbial dissolved organic carbon.
- Michaela Musilova
- , Martyn Tranter
- & Alexandre M. Anesio
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News & Views |
New pathways in the sand
Organic carbon decomposition in anoxic marine sediments was thought to be dominated by bacteria, but experimental data and microbial culture studies now show that microalgae buried in coastal sands may also play an important role in carbon turnover.
- Alexandra Rao
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News & Views |
Better living through mercury
Mercury is a toxic element with no known biological function. Laboratory studies demonstrate that mercury can be beneficial to microbial growth by acting as an electron acceptor during photosynthesis.
- Jeffra K. Schaefer
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Letter |
Rock comminution as a source of hydrogen for subglacial ecosystems
Microbes live under glaciers that have persisted for millions of years, without a clear energy supply. Analyses of crushed rocks suggest that interactions of glaciers with the rocks beneath can produce enough H2 to support methanogenic bacteria.
- J. Telling
- , E. S. Boyd
- & D. A. Hodgson
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Letter |
Water column methanotrophy controlled by a rapid oceanographic switch
Methanotrophic bacteria can consume methane emitted from the ocean floor before it reaches the atmosphere. Variations in coastal currents can reduce methane oxidation in the ocean by limiting methanotroph residence time above methane seeps.
- Lea Steinle
- , Carolyn A. Graves
- & Helge Niemann
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News & Views |
Life in the deepest depths
Deep abyssal clay sediments in organic-poor regions of the ocean present challenging conditions for life. Techniques for identifying cells at extremely low concentrations demonstrate that aerobic microbes are found throughout these deep clays in as much of 37% of the global ocean.
- Beth N. Orcutt
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Letter |
Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments
The depth of oxygen penetration and microbial activity in marine sediments varies by region. Sediment cores from the South Pacific Gyre host oxygen and aerobic microbial communities to at least 75 metres below the sea floor.
- Steven D’Hondt
- , Fumio Inagaki
- & Wiebke Ziebis
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Letter |
Modulation of oxygen production in Archaean oceans by episodes of Fe(II) toxicity
Earth’s initial oxygenation took several hundred million years. Experiments and geochemical modelling suggest that early photosynthetic marine microbes may have been repeatedly stressed by Fe(II) delivered by submarine volcanism.
- Elizabeth D. Swanner
- , Aleksandra M. Mloszewska
- & Andreas Kappler
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Commentary |
The elements of marine life
Today, the ratio of carbon to nitrogen and phosphorus in marine organic matter is relatively constant. But this ratio probably varied during the Earth's history as a consequence of changes in the phytoplankton community and ocean oxygen levels.
- Noah J. Planavsky
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Letter |
Microbial shaping of sedimentary wrinkle structures
Wrinkle structures in ancient sedimentary environments are enigmatic. Wave-tank experiments suggest that wrinkle structures are shaped by microbial mat fragments that are moved by waves over sandy-bed surfaces, and thus are morphological biosignatures.
- G. Mariotti
- , S. B. Pruss
- & T. Bosak
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Review Article |
Microbial biogeochemistry of coastal upwelling regimes in a changing ocean
Coastal upwelling regimes associated with eastern boundary currents are the most biologically productive ecosystems in the ocean. A suite of human-induced changes could perturb primary production and nutrient cycling in these highly dynamic systems.
- Douglas G. Capone
- & David A. Hutchins
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Article |
Methylmercury production below the mixed layer in the North Pacific Ocean
Mercury enters marine food webs in the form of microbially generated monomethylmercury. An analysis of the mercury isotopic composition of nine species of North Pacific fish suggests that microbial production of monomethylmercury below the surface mixed layer contributes significantly to the mercury contamination of marine food webs.
- Joel D. Blum
- , Brian N. Popp
- & Marcus W. Johnson
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Letter |
Widespread coupling between the rate and temperature sensitivity of organic matter decay
Soils comprise the largest terrestrial carbon store on the planet. Soil respiration measurements suggest that the more biogeochemically recalcitrant the soil organic matter, the greater the temperature sensitivity of soil respiration.
- Joseph M. Craine
- , Noah Fierer
- & Kendra K. McLauchlan
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News & Views |
Cryptic wetlands
Wetlands are home to microorganisms that produce and emit methane. Very small wetlands, tucked into unexpected places, might be making a larger contribution to the global methane budget than previously thought.
- Joseph B. Yavitt
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Letter |
Soil-carbon response to warming dependent on microbial physiology
The loss of carbon dioxide from soils increases initially under climate warming, but tends to decline to control levels within a few years. Simulations of the soil-carbon response to warming with a microbial-enzyme model show that a decline in both microbial biomass and the production of degrading enzymes can explain this attenuation response.
- Steven D. Allison
- , Matthew D. Wallenstein
- & Mark A. Bradford