Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Correspondence
  • Published:

Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA

The three N-terminal zinc fingers of transcription factor IIIA bind in the DNA major groove. Substantial packing interfaces are formed between adjacent fingers, the linkers lose their intrinsic flexibility upon DNA binding, and several lysine side chains implicated in DNA recognition are dynamically disordered.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

References

  1. Engelke, D.R., Ng, S.-Y., Shastry, B.S. & Roeder, R.G. Cell 19, 717–728 (1980).

    Article  CAS  Google Scholar 

  2. Miller, J., McLachlan, A.D. & Klug, A. EMBO J. 4, 1609–1614 (1985).

    Article  CAS  Google Scholar 

  3. Ginsberg, A.M., King, B.O. & Roeder, R.G. Cell 39, 479–489 (1984).

    Article  CAS  Google Scholar 

  4. Fairall, L., Rhodes, D. & Klug, A.J. Mol. Biol. 192, 577–591 (1986).

    Article  CAS  Google Scholar 

  5. Berg, J.M. Ann. Rev. Biophys. Biophys. Chem. 19, 405–421 (1990).

    Article  CAS  Google Scholar 

  6. Kochoyan, K. et al. Biochemistry 30, 3371–3386 (1991).

    Article  CAS  Google Scholar 

  7. Clemens, K.R., Liao, X., Wolf, V., Wright, P.E. & Gottesfeld, J.M. Proc. Natl. Acad. Sci. USA 89, 10822–10826 (1992).

    Article  CAS  Google Scholar 

  8. Hayes, J.J. & Tullius, T.D. J. Mol. Biol. 227, 407–417 (1992).

    Article  CAS  Google Scholar 

  9. Liao, X., Clemens, K.R., Tennant, L., Wright, P.E. & Gottesfeld, J.M. J. Mol. Biol. 223, 857–871 (1992).

    Article  CAS  Google Scholar 

  10. Lee, M.S., Gippert, G., Soman, K.Y., Case, D.A. & Wright, P.E. Science 245, 635–637 (1989).

    Article  CAS  Google Scholar 

  11. Parraga, G., Horvath, S.J., Eisen, A. et al. Science 241, 1489–1492 (1988).

    Article  CAS  Google Scholar 

  12. Pavletich, N.P. & Pabo, C.O. Science 252, 809–817 (1991).

    Article  CAS  Google Scholar 

  13. Brüschweiler, R., Liao, X. & Wright, P.E. Science 268, 886–889 (1995).

    Article  Google Scholar 

  14. Thukral, S.K., Morrison, M.L. & Young, E.T. Proc. Natl. Acad. Sci. USA 88, 9188–9192 (1991).

    Article  CAS  Google Scholar 

  15. Wilson, T.E. et al. J. Biol. Chem. 267, 3718–3724 (1992).

    PubMed  CAS  Google Scholar 

  16. Clemens, K.R., Wolf, V., McBryant, S.J. et al. Science 260, 530–533 (1993).

    Article  CAS  Google Scholar 

  17. Clemens, K.R. et al. J. Mol. Biol. 244, 23–35 (1994).

    Article  CAS  Google Scholar 

  18. Choo, Y. & Klug, A. Nucleic Acids Res. 21, 3341–3346 (1993).

    Article  CAS  Google Scholar 

  19. Desjarlais, J.R. & Berg, J.M. Proc. Natl. Acad. Sci. USA 90, 2256–2260 (1993).

    Article  CAS  Google Scholar 

  20. Zang, W.Q., Veldhoen, N. & Romaniuk, P.J. Biochemistry 34, 15545–15552 (1995).

    Article  CAS  Google Scholar 

  21. Billeter, M. et al. J. Mol. Biol. 234, 1084–1093 (1993).

    Article  CAS  Google Scholar 

  22. Pascal, S.M., Yamazaki, T., Singer, A.U., Kay, L. E. & Forman-Kay, J. D. Biochemistry 34, 11353–11362 (1995).

    Article  CAS  Google Scholar 

  23. Slijper, M. et al. Biochemistry 36, 249–254 (1997).

    Article  CAS  Google Scholar 

  24. Doig, A.J. & Sternberg, M.J.E. Protein Sci. 4, 2247–2251 (1995).

    Article  CAS  Google Scholar 

  25. McDonald, I.K. & Thornton, J.M. J. Mol. Biol. 238, 777–793 (1994).

    Article  CAS  Google Scholar 

  26. Pavletich, N.P. & Pabo, C.O. Science 261, 1701–1707 (1993).

    Article  CAS  Google Scholar 

  27. Fairall, L., Schwabe, J.W.R., Chapman, L., Finch, J.T. & Rhodes, D. Nature 366, 483–487 (1993).

    Article  CAS  Google Scholar 

  28. Rebar, E.J. & Pabo, C.O. Science 263, 671–673 (1994).

    Article  CAS  Google Scholar 

  29. Choo, Y., Sánchez-García, I. & Klug, A. Nature 372, 642–645 (1994).

    Article  CAS  Google Scholar 

  30. Greisman, H.A. & Pabo, C.O. Science 275, 657–661 (1997).

    Article  CAS  Google Scholar 

  31. Liao, X., Clemens, K.R., Cavanagh, J., Tennant, L. & Wright, P.E. J. Biomol. NMR 4, 433–454 (1994).

    Article  CAS  Google Scholar 

  32. Delaglio, F. et al. J. Biomol. NMR 6, 277–293 (1995).

    Article  CAS  Google Scholar 

  33. Kördel, J., Skelton, N.J., Akke, M., Palmer, A.G., III & Chazin, W.J. Biochemistry 31, 4856–4866 (1992).

    Article  Google Scholar 

  34. Grzesiek, S. & Bax, A. J. Am. Chem. Soc. 115, 12593–12594 (1993).

    Article  CAS  Google Scholar 

  35. Bax, A., Vuister, G.W., Grzesiek, S. et al. Meth. Enz. 239, 79–105 (1994).

    CAS  Google Scholar 

  36. Love, J.J. et al. Nature 376, 791–795 (1995).

    Article  CAS  Google Scholar 

  37. Nilges, M. J. Mol. Biol. 245, 645–660 (1995).

    Article  CAS  Google Scholar 

  38. Nicholls, A. & Honig, B. J. Computat. Chem. 12, 435–4w45 (1991).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Peter E. Wright.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Foster, M., Wuttke, D., Radhakrishnan, I. et al. Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Nat Struct Mol Biol 4, 605–608 (1997). https://doi.org/10.1038/nsb0897-605

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nsb0897-605

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing