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The overall structure of the U-box (ribbon and surface) from a yeast pre-mRNA splicing factor Prp19 resembles that of a RING finger domain. Two hydrogen-bonding networks (locations marked by green spheres) replace the Zn ions in the RING finger domain to stabilize the structure. The integrity of the U-box is important for its ubiquitin ligase activity and for the function of Prp19 in vivo. See pages 250–255.
Recent structural studies of acetyl-coenzyme A synthase/carbon monoxide dehydrogenase from Moorella thermoacetica revealed a unique Cu-Ni-[Fe4-S4] active site. New data now indicate that active enzyme contains a Ni-Ni-[Fe4-S4] site. Novel chemistry is posited for the central Ni atom of this enzyme, which utilizes the toxic gas CO as a catalytic intermediate.
Many different RNA species undergo nucleotide modifications at sites identified by guide small nucleolar ribonucleoprotein (snoRNP) particles. The co-crystal structure of two snoRNP proteins gives valuable clues into the workings of this system.
New structural analysis finds a metal-oxo clusters bound to the iron trafficking protein Fbp. Does this point to a possible strategy for bacterial iron acquisition?
Function analysis of 'insulators' has led to the idea that they comprise two separable and mechanistically distinct insulating activities — one blocking enhancer cross-talk and the other barring heterochromatin spreading. However, results from two recent studies have blurred this mechanistic distinction.
Covalent attachment of ubiquitin-like proteins to other proteins drives numerous important physiological processes. The recent structure of an ubiquitin-like E1 enzyme provides insight into the curious assembly line–like mechanism that initiates all ubiquitin-related protein processing pathways.