Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Genome Watch
  • Published:

Faecal matters

Abstract

The human gastrointestinal (GI) tract contains a highly diverse and dynamic community of commensal microorganisms that consists of both permanent residents and seemingly transient visitors. This month's column looks at four gut-related microbial sequencing projects.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

References

  1. Eckburg, P. B. et al. Diversity of the human intestinal microbial flora. Science. 308, 1635–1638 (2005).

    Article  Google Scholar 

  2. Gill, S. R. et al. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355–1359 (2006).

    Article  CAS  Google Scholar 

  3. Claesson, M. J. et al. Multireplicon genome architecture of Lactobacillus salivarius. Proc. Natl Acad. Sci. USA 103, 6718–6723 (2006).

    Article  CAS  Google Scholar 

  4. Flynn, S, et al. Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology 148, 973–984 (2002).

    Article  CAS  Google Scholar 

  5. Fricke, W. F. et al. The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. J. Bacteriol. 188, 642–658 (2006).

    Article  CAS  Google Scholar 

  6. van de Guchte, M. et al. The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc. Natl Acad. Sci. USA 103, 9274–9279 (2006).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Related links

Related links

DATABASES

Entrez Genome Project

Lactobacillus acidophilus

Lactobacillus delbrueckii subsp. bulgaricus

Lactobacillus johnsonii

Lactobacillus salivarius subsp. salivarius UCC118

FURTHER INFORMATION

COG

KEGG

Nature Reviews Microbiology Focus on Metagenomics

Rights and permissions

Reprints and permissions

About this article

Cite this article

Walker, A., Cerdeño-Tárraga, A. & Bentley, S. Faecal matters. Nat Rev Microbiol 4, 572–573 (2006). https://doi.org/10.1038/nrmicro1483

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1038/nrmicro1483

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing