Supplementary information

From the following article

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke, Xiaoqi Shi, Robert S Fulton, Timothy J Ley, Richard K Wilson, Li Ding & Elaine R Mardis

Nature Methods 6, 677 - 681 (2009) Published online: 9 August 2009

doi:10.1038/nmeth.1363

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Supplementary Text and Figures

Supplementary Figures 1–12, Supplementary Tables 2, 4–8 and Supplementary Note

Supplementary Table 1

List of structural variants detected in simulation.

Supplementary Table 3

A list of AML2 structural variants detected by BreakDancer, refined by local assembly and validated via PCR resequencing.

Supplementary Software

The BreakDancer software package encompasses two algorithms: BreakDancerMax detects large structural variants (deletions, insertions, inversions, and intra- and interchromosomal translocations), and BreakDancerMini detects small (10–100 bp) insertions and deletions.

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Systems Biology Markup Language files (SBML)

Chemical Markup language files (CML)

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