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Letter

Nature 447, 735-738 (7 June 2007) | doi:10.1038/nature05864; Received 23 February 2007; Accepted 24 April 2007

Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination

Vaniyambadi V. Sridhar1,4, Avnish Kapoor1,4, Kangling Zhang2, Jianjun Zhu3, Tao Zhou3, Paul M. Hasegawa3, Ray A. Bressan3 & Jian-Kang Zhu1

  1. Center for Plant Cell Biology and Department of Botany and Plant Sciences,
  2. Mass Spectrometry Facility, Department of Chemistry, University of California, Riverside, California 92521, USA
  3. Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907, USA
  4. These authors contributed equally to this work.

Correspondence to: Jian-Kang Zhu1 Correspondence and requests for materials should be addressed to J.-K.Z. (Email: jian-kang.zhu@ucr.edu).

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Epigenetic regulation involves reversible changes in DNA methylation and/or histone modification patterns1, 2, 3, 4, 5, 6, 7. Short interfering RNAs (siRNAs) can direct DNA methylation and heterochromatic histone modifications, causing sequence-specific transcriptional gene silencing1, 4, 8, 9. In animals and yeast, histone H2B is known to be monoubiquitinated, and this regulates the methylation of histone H3 (refs 10, 11). However, the relationship between histone ubiquitination and DNA methylation has not been investigated. Here we show that mutations in an Arabidopsis deubiquitination enzyme, SUP32/UBP26, decrease the dimethylation on lysine 9 of H3, suppress siRNA-directed methylation of DNA and release heterochromatic silencing of transgenes as well as transposons. We found that Arabidopsis histone H2B is monoubiquitinated at lysine 143 and that the levels of ubiquitinated H2B and trimethyl H3 at lysine 4 increase in sup32 mutant plants. SUP32/UBP26 can deubiquitinate H2B, and chromatin immunoprecipitation assays suggest an association between H2B ubiquitination and release of silencing. These data suggest that H2B deubiquitination by SUP32/UBP26 is required for heterochromatic histone H3 methylation and DNA methylation.

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