Supplementary information

Supplementary Data 1

This file contains the results of single-linkage clustering of all Neanderthal extract sequences. Each line contains the identifier(s) of the sequences in that cluster. Sequences were clustered by 95% identity over 95% of their length, as described in Supplementary Methods.

Supplementary Data 1 - Download Text file (6MB)

Supplementary Data 2

This file contains a tab-delimited text table with best database hit information for each sequence. There are fields for the best hit sequence ID, organism, and various alignment statistics, including the alignment strings.

Supplementary Data 2 - Download Text file (45.6MB)

Supplementary Data 3

Master alignment in fasta alignment format of complete mtDNA sequences from 311 humans, 3 chimpanzees, 2 bonobos, and 1 gorilla. This is the alignment into which the Neanderthal mtDNA sequences were merged.

Supplementary Data 3 - Download Text file (5.1MB)

Supplementary Data 4

Alignment file of Neanderthal mtDNA sequence fragments merged into the master alignment, in clustalw format. Note that the mtDNA phylogenetic analysis does not include the gorilla sequence.

Supplementary Data 4 - Download Text file (1.6MB)

Supplementary Data 5

Alignment file of Neandertal mtDNA sequences that were PCR confirmed from the original extract, in clustalw format. Note that the mtDNA phylogenetic analysis does not include the gorilla sequence.

Supplementary Data 5 - Download Text file (1.4MB)

Supplementary Data 7

3-way multiple sequence alignment of Neanderthal/human/chimpanzee sequences with chimpanzee quality-score codes, in fasta-like format.

Supplementary Data 7 - Download Text file (5.3MB)

Supplementary Video Streaming

Supplementary Video Streaming - Download html (MB)