Letter
Nature 435, 983-987 (16 June 2005) | doi:10.1038/nature03668; Received 13 January 2005; Accepted 14 April 2005
Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products
Tomohisa Kuzuyama1,2, Joseph P. Noel1 & Stéphane B. Richard1
- Jack Skirball Chemical Biology and Proteomics Laboratory, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, California 92037, USA
- Laboratory of Cell Biotechnology, Biotechnology Research Center, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
Correspondence to: Stéphane B. Richard1
Correspondence and requests for materials should be addressed to S.B.R (Email: richard@salk.edu).
The atomic coordinates and structure factors of Orf2 in complex with TAPS, Mg2 -GPP, Mg2 -GSPP-1,6-DHN and Mg2 -GSPP-flaviolin have been deposited in the Protein Data Bank under accession codes 1ZDY, 1ZCW, 1ZB6 and 1ZDW, respectively.
The anti-oxidant naphterpin is a natural product containing a polyketide-based aromatic core with an attached 10-carbon geranyl group derived from isoprenoid (terpene) metabolism1, 2, 3. Hybrid natural products such as naphterpin that contain 5-carbon (dimethylallyl), 10-carbon (geranyl) or 15-carbon (farnesyl) isoprenoid chains possess biological activities distinct from their non-prenylated aromatic precursors4. These hybrid natural products represent new anti-microbial, anti-oxidant, anti-inflammatory, anti-viral and anti-cancer compounds. A small number of aromatic prenyltransferases (PTases) responsible for prenyl group attachment have only recently been isolated and characterized5, 6. Here we report the gene identification, biochemical characterization and high-resolution X-ray crystal structures of an architecturally novel aromatic PTase, Orf2 from Streptomyces sp. strain CL190, with substrates and substrate analogues bound. In vivo, Orf2 attaches a geranyl group to a 1,3,6,8-tetrahydroxynaphthalene-derived polyketide during naphterpin biosynthesis. In vitro, Orf2 catalyses carbon–carbon-based and carbon–oxygen-based prenylation of a diverse collection of hydroxyl-containing aromatic acceptors of synthetic, microbial and plant origin. These crystal structures, coupled with in vitro assays, provide a basis for understanding and potentially manipulating the regio-specific prenylation of aromatic small molecules using this structurally unique family of aromatic PTases.
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