Supplementary information
From the following article:
Olivier Jaillon, Jean-Marc Aury, Frédéric Brunet, Jean-Louis Petit, Nicole Stange-Thomann, Evan Mauceli, Laurence Bouneau, Cécile Fischer, Catherine Ozouf-Costaz, Alain Bernot, Sophie Nicaud, David Jaffe, Sheila Fisher, Georges Lutfalla, Carole Dossat, Béatrice Segurens, Corinne Dasilva, Marcel Salanoubat, Michael Levy, Nathalie Boudet, Sergi Castellano, Véronique Anthouard, Claire Jubin, Vanina Castelli, Michael Katinka, Benoît Vacherie, Christian Biémont, Zineb Skalli, Laurence Cattolico, Julie Poulain, Véronique de Berardinis, Corinne Cruaud, Simone Duprat, Philippe Brottier, Jean-Pierre Coutanceau, Jérôme Gouzy, Genis Parra, Guillaume Lardier, Charles Chapple, Kevin J. McKernan, Paul McEwan, Stephanie Bosak, Manolis Kellis, Jean-Nicolas Volff, Roderic Guigó, Michael C. Zody, Jill Mesirov, Kerstin Lindblad-Toh, Bruce Birren, Chad Nusbaum, Daniel Kahn, Marc Robinson-Rechavi, Vincent Laudet, Vincent Schachter, Francis Quétier, William Saurin, Claude Scarpelli, Patrick Wincker, Eric S. Lander, Jean Weissenbach and Hugues Roest Crollius
Nature 431, 946-957(21 October 2004)
doi:10.1038/nature03025
Supplementary Information
Tetraodon naming conventions, natural habitat and phylogeny
Supplementary Figure 1
Mitochondrial DNA sequence alignments for Tetraodon species identification
Supplementary Figure 2
Phylogenetic tree of Tetraodon family
Supplementary Figure 3
Flow cytometry results for genome size measurements
Supplementary Figure 4
Percentage G+C distribution and repeat content
Supplementary Figure 5
GAZE automaton and data transformation for genome annotation
Supplementary Figure 6
Distribution of exon and intron sizes
Supplementary Figure 7
Tetraodon catalogue of helical cytokines I and their receptors
Supplementary Figure 8
Tetraodon, Takifugu and zebrafish HOX gene clusters
Supplementary Figure 9
Gene Ontology annotation of proteins from 5 metazoan species
Supplementary Figure 10
Protein evolution in fish and mammals
Supplementary Figure 11
Synteny maps between Tetraodon and mouse
Supplementary Figure 12
Complete Oxford grid for Tetraodon-Human ortholog distribution
Supplementary Figure 13
Cladistic representation of chordate evolution
Supplementary Methods
Supplementary Tables
Table 1) Sequencing statistics
Table 2) Sequencing statistics per chromosome
Table 3) Catalogue of transposable elements in the Tetraodon genome
Table 4) Summary of evidence (coding segments) used to annotate the Tetraodon genome
Table 5) Summary of evidence (signals) used to annotate the Tetraodon genome
Table 6) Interpro domain content in four vertebrates and one urochrodate
Table 7) Top 100 Interpro families in Tetraodon
Table 8) Exofish analysis of five finished human chromosomes
Table 9) Statistics on 904 new human genes
Table 10) Distribution of the 904 new human genes on human chromosomes
Table 11) Rates of DNA evolution in vertebrates
Table 12) Expected probability that two Tetraodon chromosomes share the observed number of duplicated genes assuming a uniform distribution
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