Supplementary information
From the following article:
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Rat Genome Sequencing Project Consortium
Nature 428, 493-521(1 April 2004)
doi:10.1038/nature02426
Supplementary Information
Additional history of the rat, rat genetics, and the rat genome sequencing project.
Supplementary Figure 1
BAC clone selection process.
Supplementary Figure 2
Coverage of finished BACs based on depth of BAC bait coverage.
Supplementary Figure 3
Partitioning of the Fingerprint and YAC map contigs against the rat sequence assembly.
Supplementary Figure 4
Coverage of BAC clones selected for sequencing from the fingerprint map.
Supplementary Figure 5
Correlation of SINE locations in rat and mouse.
Supplementary Figure 6
Dot-plots showing positions of aligning segments in rat-rat, rat-mouse, and rat-human comparisons, for a 10 Mb region of rat Chromosome 10 and the orthologous regions in mouse and human.
Supplementary Figure 7
Sequence conservation at AG acceptor splice sites in aligned introns.
Supplementary Figure 8
Sequence conservation at GT donor splice sites in aligned introns.
Supplementary Tables
Table 1). Mammalian genome sequences categorized by alignments and inferred origins; Table 2). Contigs anchored to chromosomes; Table 3). Mitochondrial genome sequence comparison; Table 4). CpG Island distribution by chromosome; Table 5). Rat non-coding RNAs; Table 6). Gene count in human, mouse and rat genomes; Table 7). Gene predictions on the rat genome.
Supplementary Methods
Supplementary Figure Legends
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