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Restriction Endonuclease Map of pTi Bo542, a Potential Ti Plasmid Vector for Genetic Engineering of Plants

Abstract

We report here a physical map of pTi Bo542, a wide-host-range tumor-inducing plasmid of Agrobacterium tumefaciens. Forty-two fragments generated by the restriction endonuclease Bam HI were arranged in a circular array using electrophoretic analysis of clones containing overlapping segments of pTi Bo542. The T-DNA region (the part of the Ti plasmid transferred to the plant) was predicted by its homology to T-DNAs from heterologous octopine and nopaline Ti plasmids. Southern hybridizations against soybean tumor DNA using clones from this region as probes confirmed this prediction.

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References

  1. Smith, E.F. and Townsend, C.O. 1907. A plant tumor of bacterial origin. Science 25: 671–673.

    Article  CAS  PubMed  Google Scholar 

  2. Zaenen, I., Van Larebeke, N., Teudiy, H., Van Montagu, M. and Schell, J. 1974. Supercoiled circular DNA in crown-gall inducing Agrobacterium strains. J. Mol. Biol. 86: 109–127.

    Article  CAS  PubMed  Google Scholar 

  3. Van Larebeke, N., Engler, G., Holslcrs, M., Van denFlsacker, S., Zaenen, I., Schilperoort, R.A. and Schell, J. 1974. Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability. Nature 252: 169–170.

    Article  CAS  PubMed  Google Scholar 

  4. Van Larebeke, N., Genetello, C., Schell, J., Schilperoort, R., Hermans, A., Hernalsteens, J.P. and Van Montagu, M. 1975. Acquisition of tumor-inducing ability by non-oncogenic agrobacteria as a result of plasmid transfer. Nature 255: 742–743.

    Article  CAS  PubMed  Google Scholar 

  5. Watson, B., Currier, T., Gordon, M., Chilton, M.D. and Nester, E. 1975. Plasmid required for virulence of Agrobacterium tumefaciens . J. Bacteriol. 123: 255–264.

    CAS  PubMed  PubMed Central  Google Scholar 

  6. Chilton, M.U., Urummond, M., Merlo, D., Sciaky, D., Montoya, A., Gordon, M. and Nester, E. 1977. Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall lumorigoiesis. Cell 11: 203–271.

    Article  Google Scholar 

  7. Chilton, M.D., Saiki, R., Yadav, N., Gordon, M. and Quelier, F. 1980. T-UNA from Agrobacterium Ti plasmid is in the nuclear DNA fraction of crown gall tumor cells. Proc. Natl. Acad. Sci. USA 77: 4060–4064.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Lemmers, M., De Beukeleer, M., Holsters, M., Zambryski, P., Depicker, A., Hcnialslccns, J.P., Van Montagu, M. and Schell, J. 1980. Internal organization, boundaries and integration of Ti-plasmid DNA in nopaline crown gall tumors. J. Mol. Biol. 144: 353–376.

    Article  CAS  PubMed  Google Scholar 

  9. Merlo, D.J., Nutter, R.C., Montoya, A.L., Garfmkcl, D.J., Drummond, M.H., Chilton, M.D., Gordon, M.P. and Nester, E.W. 1980. The boundaries and copy numbers of Ti plasmid T-DNA vary in crown gall tumors. Mol. Gen. Genet. 177: 637–613.

    Article  CAS  PubMed  Google Scholar 

  10. Thomashow, M., Nutter, R., Postle, K., Chilton, M.D., Blattner, F., Powell, A., Gordon, M. and Nester, E. 1980. Recombination between higher plant DNA and the Ti plasmid of Agrobaclerium tumefaciem. Proc. Natl. Acad. Sci. USA 77: 6448–6452.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Willmitzer, L., De Beukeleer, M., Lemmers, M., Van Montagu, M. and Schell, J. 1980. DNA from Ti plasmid present in nucleus and absent from plastids of crown gall plant cells. Nature 287: 359–301.

    Article  CAS  Google Scholar 

  12. Yadav, N.S., Postle, K., Saiki, R.K., Thomashow, M. and Chilton, M.D. 1980. T-DNA of a crown gall teratoma is covalently joined to host plant DNA. Nature 287: 458–461.

    Article  CAS  PubMed  Google Scholar 

  13. Yang, F., Montoya, A., Merlo, D., Drummond, M., Chilton, M.D., Nester, E. and Gordon, M. 1980. Foreign DNA sequences in crown gall teratomas and their fate during the loss of the tumorous traits. Mol. Gen. Genet. 177: 707–714.

    Article  CAS  PubMed  Google Scholar 

  14. Zambryski, P., Holsters, M., Kruger, K., Schell, J., Van Montagu, M. and Goodman, H. 1980. Tumor DNA structure in plant cells transformed by Agrobacterium tumefaciens . Science 209: 1385–1391.

    Article  CAS  PubMed  Google Scholar 

  15. Drummond, M.H., Gordon, M.P., Nester, E.W. and Chilton, M.D. 1977. Foreign DNA of bacterial plasmid origin is transcribed in crown gall tumors. Nature 269: 535–536.

    Article  CAS  Google Scholar 

  16. Gurley, W.B., Hemp, J.D., Albert, M.J., Sulton, D.W. and Callis, J. 1979. Transcription of Ti plasmid-derived sequences in three octopine-type tumor lines. Proc. Natl. Acad. Sci. USA 76: 2828–2832.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Gelvin, S.B., Gordon, M.P., Nester, E.W. and Aronson, A.I. 1981. Transcription of the Agrobacterium Ti plasmid in the bacterium and in crown gall tumors. Plasmid 6: 17–29.

    Article  CAS  PubMed  Google Scholar 

  18. Bevan, M.W. and Chilton, M.D. 1982. T-DNA of the Agrobacterium Ti and Ri plasmids.Ann. Rev. Genet. 16: 357–384.

    Article  CAS  PubMed  Google Scholar 

  19. Garfrnkel, D. and Nester, E. 1980. Agrobacterium tumefaciens mutants affcclcd in crown gall tumorigenesis and octopine calabolism. J. Bacteriol. 144: 732–743.

    Google Scholar 

  20. Engler, G., Depicker, A., Maenhaut, R., Villarroel-Mandiola, R., Van Montagu, M. and Schell, J. 1981. Physical mapping of DNA base sequence homologics between an octopine and a nopaline Ti-plasmid of Agrobacterium tumefaciens . J. Mol. Biol. 152: 183–208.

    Article  CAS  PubMed  Google Scholar 

  21. Garfinkel, D.J., Simpson, R.B., Ream, L.W., White, F.F., Gordon, M.P. and Nester, E.W. 1981. Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis. Cell 27: 143–153.

    Article  CAS  PubMed  Google Scholar 

  22. Lecmans, J., Shaw, C., Deblaere, R., De Greve, H., Hernalsteens, J.P., Maes, M., Van Montagu, M. and Schell, J. 1981. Site-specific mutagenesis of Agrobacterium Ti plasmids and transfer of genes to plant cells. J. Mol. Appl. Genet. 1: 149–164.

    Google Scholar 

  23. Ooms, G., Hooykaas, P., Moolenaar, G. and Schilperoort, R. 1981. Crown gall plant tumors of abnormal morphology, induced by Agrobacterium tumefaciens carrying mutated octopine Ti plasmids; analysis of T-DNA functions. Gene 14: 33–50.

    Article  CAS  PubMed  Google Scholar 

  24. Schroder, J., Schröder, G., Huisman, H., Schilperoort, R.A. and Schell, J. 1981. The mRNA for lysopine dehydrogenase in plant tumor cells is complementary to a Ti plasmid fragment. FEBS Lett. 129: 166–168.

    Article  Google Scholar 

  25. Leemans, J., Deblaere, R., Willmitzer, L., De Greve, H., Hernalsleerrs, J.P., Van Montagu, M. and Schell, J. 1982. Genetic identification of functions of TL-DNA transcripts in octopine crown galls. EMBO J. 1: 174–152.

    Article  Google Scholar 

  26. Murai, N. and Kemp, J.D. 1982. Octopine synlhase mRNA isolated from sunflower crown gall callus is homologous to the Ti plasmid of Agrobacterium tumefaciens . Proc. Natl. Acad. Sci. USA 79: 86–90.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Willmitzer, L., Simons, G. and Schell, J. 1982. The TL-DNA in octopine crown-gall tumors codes for seven well-defined polyadenyl-ated transcripts. EMBO J. 1: 139–146.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Bevan, M., Barnes, W. and Chilton, M.D. 1983. Structure and transcription of the nopaline synthase gene region of T-DNA. Nuc. Acids Res. 11: 369–385.

    Article  CAS  Google Scholar 

  29. Hernalsteens, J.P., Van Vliet, F., De Beuckeleer, M., Depicker, A., Engler, G., Lemmers, M., Holsters, M., Van Montagu, M. and Schell, J., 1980. The Agrobacterium tumejaciem Ti plasmid as a host vector system for introducing foreign DNA in plant cells. Nature 287: 654–656.

    Article  CAS  Google Scholar 

  30. Thomashow, M.F., Panagopoulos, C.G., Gordon, M.P. and Nester, E.W. 1980. Host range of Agrobacterium tumefaciens is determined by lire Ti plasmid. Nature 283: 794–796.

    Article  Google Scholar 

  31. Thomashow, M.F., Knauf, V.C. and Nester, E.W. 1981. Relationship between the limited and wide host range octopine-type Ti plasmids of Agrobacterium tumefaciens . J. Bacteriol. 146: 484–493.

    CAS  PubMed  PubMed Central  Google Scholar 

  32. Panagopoulos, C.G. and Psallidas, P.G. 1973. Characteristics of Greek isolates of Agrobacterium tumefaciens . J. Appl. Bacleriol. 36: 233–240.

    Article  CAS  Google Scholar 

  33. De Cleene, M. and De Ley, J. 1976. The host range of crown-gall. Botan. Rev. 42: 389–466.

    Article  Google Scholar 

  34. Loper, J. and Kado, C. 1979. Host range conferred by the virulence-specifying plasmid of Agrobacterium tumefaciens . J. Raclcriol. 139: 591–596.

    CAS  Google Scholar 

  35. Kao, J.C., Perry, K.L. and Kado, C.I. 1983. Indoleacetic acid complementation and its relation to host range specifying genes on the Ti plasmid of Agrobacterium tumefaciens . Mol. Gen. Genet. 188: 425–432.

    Article  Google Scholar 

  36. Matzkc, A. and Chilton, M.D. 1981. Site specific insertion of genes into T-DNA on the Agrobacterium tumor-inducing plasmid: An approach to genetic engineering of higher plant cells. J. Mol. Appl. Genet. 1: 39–49.

    Google Scholar 

  37. Bevari, M.W., Flavdl, R.B. and Chilton, M.D. 1983. A chimeric antibiotic resistance gene as a selectable marker for plant cell transfermation. Nature 304: 184–187.

    Article  Google Scholar 

  38. Fraley, R.T., Rogers, S.G., Horsch, R.B., Sanders, P.R., Flick, J.S., Adams, S.P., Bittner, M.L., Brand, L.A., Fink, C.L., Fry, J.S., Gallupi, G.R., Goldberg, S.B., Hoffmann, N.L. and Woo, S.C. 1983. Expression of bacterial genes in plant cells. Proc. Natl. Acad. Sci. USA 80: 4803–4807.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  39. Herrera-Estrella, L., De Block, M., Messens, E., Hernalsteens, J.P., Van Montagu, M. and Schell, J. 1983. Chimeric genes as dominant selectable markers in plants. EMBO J. 2: 987–995.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Helmer, G., Casadaban, M., Sevan, M., Kayes, L. and Chilton, M.D. 1984. A new chimeric gene as a marker for plant transformation: The expression of Escherichia coli β-galactosidase in sunflower and tobacco cells. Bio/Technology, 2: 520–327.

    CAS  Google Scholar 

  41. Murai, N., Sutton, D., Murray, M., Slightom, J., Merlo, D., Reichert, N., Sengupta-Gopalan, C., Stock, C., Barker, R., Kemp, J. and Hall, T. 1983. Phaseolin gene from bean is expressed after transfer to sunflower via tumor-inducing plasmid vectors. Science 222: 476–481.

    Article  CAS  PubMed  Google Scholar 

  42. Horsch, R.B., Fraley, R.T., Rogers, S.G., Sanders, P.R., Lloyd, A. and Hoffman, N. 1984. Inheritance of functional foreign genes in plants. Science 223: 496–498.

    Article  CAS  PubMed  Google Scholar 

  43. Guyon, P., Chilton, M.D., Petit, A. and Tempé, J. 1980. Agropine in “null-type” crown gall tumors: Evidence for generality of the opine concept. Proc. Natl. Acad. Sci. USA 77: 2693–2697.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  44. Chang, C.-C., Chen, C.-M., Adams, B.R. and Trost, B.M., 1983. Leucinopine, a characteristic compound of some crown-gall tumors. Proc. Natl. Acad. Sci. USA 80: 3573–3576.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  45. Dahl, G.A., Guyon, P., Petit, A. and Tempé, J. 1983. Silver nitrate-positive opines in crown gall tumors. Plant Science Letters 32: 193–203.

    Article  CAS  Google Scholar 

  46. Ellis, J.G. and Murphy, P.J. 1981. Four new opines from crown gall tumors—their detection and properties. Mol. Gen. Genet. 181: 36–43.

    Article  CAS  Google Scholar 

  47. Chilton, M.D., Drummond, M., Merlo, D. and Sciaky, D. 1978. Highly conserved DNA of Ti plasmids overlaps T-DNA maintained in plant tumors. Nature 275: 147–149.

    Article  CAS  Google Scholar 

  48. Byrne, M.C., Koplow, J., David, C., Tempé, J. and Chilton, M.D. 1983. Structure of T-DNA in roots transformed by Agrobacterium rhizogenes . J. Mol. Appl. Genet. 2: 201–209.

    CAS  PubMed  Google Scholar 

  49. Firmin, J.L. and Fenwick, G.R. 1978. Agropine—A major new plasmid-determined metabolite in crown gall tumors. Nature 276: 842–844.

    Article  CAS  Google Scholar 

  50. Petit, A., David, C., Dahl, G.A., Ellis, J.G., Guyon, P., Casse-Delbart, F. and Tempé, J. 1983. Further extension of the opine concept: Plasmids in Agrobacterium rhizogenes cooperate for opine degradation. Mol. Gen. Genet. 190: 204–214.

    Article  CAS  Google Scholar 

  51. White, F.F., Ghidossi, G., Gordon, M.P. and Nester, E.W. 1982. Tumor induction by Agrobacterium rhizogenes involves the transfer of plasmid DNA to the plant genome. Proc. Natl. Acad. Sci. USA 79: 3193–3197.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  52. Klee, H.J., Gordon, M. and Nester, E. 1982. Complementation analysis of Agrobacterium tumefaciens Ti plasmid mutations affecting oncogenicity. J. Bacteriol. 150: 327–331.

    CAS  PubMed  PubMed Central  Google Scholar 

  53. Knauf, V.C. and Nester, E.W. 1982. Wide host range cloning vectors: A cosmid clone bank of an Agrobacterium Ti plasmid. Plasmid 8: 45–54.

    Article  CAS  PubMed  Google Scholar 

  54. Pomponi, M., Spano, L., Sabbadini, M.G. and Costantino, P. 1983. Restriction endonuclease mapping of the root-inducing plasmid of Agrobacterium rhizogenes 1855. Plasmid 10: 119–129.

    Article  CAS  PubMed  Google Scholar 

  55. Thomashow, M., Nutter, R., Montoya, A., Gordon, M. and Nester, E. 1980. Integration and organization of the Ti plasmid sequences in crown gall tumors. Cell 19: 729–739.

    Article  CAS  PubMed  Google Scholar 

  56. De picker, A., De Wilde, M., De Vos, G., De Vos, R., Van Montagu, M. and Schell, J. 1980. Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping. Plasmid 3: 193–211.

    Article  CAS  Google Scholar 

  57. Sciaky, D., Montoya, A.L. and Chilton, M.D. 1978. Fingerprints of Agrobacterium Ti plasmids. Plasmid 1: 238–253.

    Article  CAS  PubMed  Google Scholar 

  58. Sciaky, D. 1977. Plasmids of Agrobacterium tumefaciens and their role in crown gall tumorigenesis. Ph.D. thesis. Washington State University.

    Google Scholar 

  59. Murashige, T. and Skoog, F. 1962. A revised method for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15: 473–497.

    Article  CAS  Google Scholar 

  60. Birnboim, H.C. and Doly, J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nuc. Acids Res, 6: 1513–1523.

    Article  Google Scholar 

  61. Maniatis, J., Fritsch, E.J. and Sambrook, J. 1982. Molecular cloning, A laboratory manual. Cold Spring Harbor Laboratory, New York.

    Google Scholar 

  62. Blair, D.G., Sherratt, D.J., Clewell, D.B. and Helinski, D.R. 1972. Isolation of supercoiled colicinogenic factor El DNA sensitive to ribonuclease and alkali. Proc. Natl. Acad. Sci. USA 69: 2518–2522.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  63. Currier, T.C. and Nester, E.W. 1976. Isolation of covalently closed circular DNA of high molecular weight from bacteria. Anal. Biochem. 76: 431–441.

    Article  CAS  PubMed  Google Scholar 

  64. Chilton, M.D., Tepfer, D.A., Petit, A., David, C., Casse-Delbart, F. and Tempé, J. 1982. Agrobacterium rhizogenes inserts T-DNA into the genomes of the host plant root cells. Nature 295: 432–434.

    Article  CAS  Google Scholar 

  65. Southern, E.M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98: 503–518.

    Article  CAS  PubMed  Google Scholar 

  66. Wahl, G.M., Stern, M. and Stark, G.R. 1979. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl paper and rapid hybridization using dextran sulfate. Proc. Natl. Acad. Sci. USA 76: 3683–3687.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  67. Denhardt, D.T. 1966. A membrane-filter technique for the detection of complementary DNA. Biochem. Biophys. Res. Comm. 23: 641–646.

    Article  CAS  PubMed  Google Scholar 

  68. Thayer, R.E. 1979. An improved method for detecting foreign DNA in plasmids of Escherichia coli . Anal. Biochem. 98: 60–63.

    Article  CAS  PubMed  Google Scholar 

  69. Vogelstein, B. and Gillespie, D. 1979. Preparative and analytical purification of DNA from agarose. Proc. Natl. Acad. Sci. USA 76: 615–619.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  70. Cohen, S., Chang, A. and Hsu, L. 1972. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA. Proc. Natl. Acad. Sci. USA 69: 2110–2114.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  71. Hohn, B. and Collins, J. 1980. A small cosmid for efficient cloning of large DNA fragments.“ Gene 11: 291–298.

    Article  CAS  PubMed  Google Scholar 

  72. Ish-Horowicz, D. and Burke, J.F. 1981. Rapid and efficient cosmid cloning. Nuc.Acids Res. 9: 2989–2998.

    Article  CAS  Google Scholar 

  73. Murray, N.E., Brammer, W.J. and Murray, K. 1977. Lamboid phages that simplify the recovery of in vitro recombinants. Mol. Gen. Genet. 150: 53–61.

    Article  CAS  PubMed  Google Scholar 

  74. Boyer, H.W. and Roulland-Dussoix, D. A complementation analysis of the restriction and modification of DNA in Escherichia coli . J. Mol. Biol. 41: 459–472.

    Article  CAS  PubMed  Google Scholar 

  75. Soberon, X., Covarrubias, L. and Bolivar, F. 1980. Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325. Gene 9: 287–305.

    Article  CAS  PubMed  Google Scholar 

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Hood, E., Jen, G., Kayes, L. et al. Restriction Endonuclease Map of pTi Bo542, a Potential Ti Plasmid Vector for Genetic Engineering of Plants. Nat Biotechnol 2, 702–709 (1984). https://doi.org/10.1038/nbt0884-702

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