Abstract
The crystal structure of the bovine α-isoform of Rab GDP-dissociation inhibitor (GDI), which functions in vesicle-membrane transport to recycle and regulate Rab GTPases, has been determined to a resolution of 1.81 Å. GDI is constructed of two main structural units, a large complex multisheet domain I and a smaller α-helical domain II. The structural organization of domain I is surprisingly closely related to FAD-containing monooxygenases and oxidases. Sequence-conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the molecule. The two most sequence-conserved regions, which form a compact structure at the apex of GDI, are shown by site-directed mutagenesis to play a critical role in the binding of Rab proteins.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 51 print issues and online access
$199.00 per year
only $3.90 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
Pfeffer, S. R., Dirac-Svejstrug, B. & Soldati, T. J. biol. Chem. 270, 17057–17059 (1995).
Nuoffer, C. Balch, W. E. A. Rev. Biochem. 33, 949–990 (1994).
Sasaki, T. et al. J. biol. Chem. 265, 2333–2337 (1990).
Ullrich, O. et al. J. biol. Chem. 268, 18143–18150 (1993).
Anders, D. A. et al. Cell 73, 1091–1099 (1993).
Cremers, F. P. M. et al. Hum. molec. Genet. 1, 71–75 (1992).
Seabra, M. C., Brown, M. S., Slaughter, C. A., Sudhof, T. C. & Goldstein, J. L. Cell 70, 1049–1057 (1992).
Seabra, M. C., Brown, M. S. & Goldstein, J. L. Science 259, 377–381 (1993).
van Bokhoven, H. et al. Hum. molec. Genet. 3, 1041–1046 (1994).
Waldherr, M., Ragnini, A., Schweyen, R. J. & Boguski, M. S. Nature Genet. 3, 193–194 (1993).
Cremers, F. P. M., Armstrong, S. A., Seabra, M. C., Brown, M. S. & Goldstein, J. L. J. biol. Chem. 269, 2111–2117 (1994).
Jiang, Y. & Ferro-Novick, S. Proc. natn. Acad. Sci. U.S.A. 91, 4377–4381 (1994).
Fujimura, K., Tanaka, K., Nakano, A. & Toh-e, A. J. biol. Chem. 269, 9205–9212 (1994).
Alexandrov, K., Horiuchi, H., Steele-Mortimer, O., Seabra, M. C. & Zerial, M. EMBO J. 13, 5262–5273 (1964).
Entsch, B. & van Berkel, W. J. H. FASEB J. 9, 476–483 (1995).
Hecht, J. J., Kalisz, H. M., Hendle, J., Schmid, R. D. & Schomburg, D. J. molec. Biol. 229, 159–172 (1993).
Li, J., Vrielink, A., Brick, P. & Blow, D. M. Biochemistry 32, 11507–11515 (1993).
Holm, L. & Sander, C. J. molec. Biol. 233, 123–138 (1993).
Schreuder, H. A. et al. J. molec. Biol. 208, 679–696 (1989).
Wierenga, R. K., de Jong, R., Kalk, K. H., Hol, W. G. J. & Drenth, J. J. molec. Biol. 131, 55–73 (1979).
Wierenga, R. K., Terpstra, P. & Hol, W. G. J. J. molec. Biol. 187, 101–107 (1986).
Stott, K., Saito, K., Thiele, D. J. & Massey, V. J. biol. Chem. 268, 6097–6106 (1993).
Peter, F., Nuoffer, C., Pind, S. N. & Balch, W. E. J. Cell Biol. 126, 1393–1406 (1994).
Soldati, T., Riederer, M. A. & Pfeffer, S. R. Molec. Biol. Cell 4, 425–434 (1993).
Ullrich, O., Horiuchi, H., Bucci, C. & Zerial, M. Nature 368, 157–160 (1994).
Nassar, N. et al. Nature 375, 554–560 (1995).
Wilson, A. L. & Maltese, W. A. J. biol. Chem. 268, 14561–14564 (1993).
Lambright, D. G. et al. Nature 379, 311–319 (1996).
Wall, M. A. et al. Cell 83, 1047–1058 (1995).
Schalk, I. J., Stura, E. A., Matteson, J., Wilson, I. A. & Balch, W. E. J. molec. Biol. 244, 469–473 (1994).
Stura, E. A., Satterthwait, A. C., Calvo, J. C., Kaslow, D. C. & Wilson, I. A. Acta crystallogr. 50, 448–455 (1994).
Matthews, B. W. J. molec. Biol. 33, 491–497 (1968).
Harrison, S. C. J. appl. Crystallogr. 1, 84–90 (1968).
Howard, A. J. et al. J. appl. Crystallogr. 20, 383–387 (1987).
McRee, D. E. J. molec. Graph. 10, 44–47 (1992).
Furey, W. Am. crystallogr. Assoc. 40th Anniv. Meeting (New Orleans, LA, 1990).
Wang, B. C. Meth. Enzym. 115, 90–112 (1985).
Brunger, A. T. thesis, Yale Univ. (1992).
McRee, D. E. Practical Protein Crystallography 1–225 (Academic, San Diego, 1993).
Brunger, A. T. Nature 355, 472–474 (1992).
Laskowski, R. A., MacArthur, M. W., Moss, S. D. & Thornton, J. M. J. appl. Crystallogr. 26, 283–291 (1993).
Kraulis, P. J. J. appl. Crystallgr. 24, 946–950 (1991).
Kabsch, W. & Sander, S. Biopolymers 22, 2577–2637 (1993).
van den Hurk, J. A. J. M. et al. Am. J. hum. Genet. 50, 1195–1202 (1992).
Ferrin, T. E., Huang, C. C., Jarvis, L. E. & Langridge, R. J. molec. Graph. 6, 13–27 (1988).
Dascher, C. & Balch, W. E. J. biol. Chem. 269, 1437–1448 (1994).
Nuoffer, C. N., Davidson, H. W., Matteson, J., Meinkoth, J. & Balch, W. E. J. Cell Biol. 125, 225–237 (1994).
Nuoffer, C., Peter, F. & Balch, W. E. Meth. Enzym. 257, 3–8 (1995).
Shapiro, A. D. & Pfeffer, S. R. J. biol. Chem. 270, 11085–11090 (1995).
Fisher von Mollard, G., Sudhof, T. C. & Jahn, R. Nature 349, 79–81 (1991).
Dekker, L. V., De Graan, P. N. E., Pijnappel, P., Oestreicher, A. B. & Gispen, W. H. J. Neurochem. 54, 205–210 (1991).
Jones, T. et al. Acta crystallogr. A 47, 110–119 (1991).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Schalk, I., Zeng, K., Wu, SK. et al. Structure and mutational analysis of Rab GDP-dissociation inhibitor. Nature 381, 42–48 (1996). https://doi.org/10.1038/381042a0
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1038/381042a0
This article is cited by
-
Single GDP-dissociation Inhibitor Protein regulates endocytic and secretory pathways in Leishmania
Scientific Reports (2016)
-
Structure of doubly prenylated Ypt1:GDI complex and the mechanism of GDI-mediated Rab recycling
The EMBO Journal (2006)
-
Protein Prenylation: An (Almost) Comprehensive Overview on Discovery History, Enzymology, and Significance in Physiology and Disease
Monatshefte für Chemie - Chemical Monthly (2006)
-
Targeting Rab GTPases to distinct membrane compartments
Nature Reviews Molecular Cell Biology (2004)
-
How to get to the right place at the right time: Rab/Ypt small GTPases and vesicle transport
Protoplasma (1999)
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.