Abstract
The sites of DNA bending induced by binding catabolite activator protein are identified and shown to coincide with positions where DNA grooves face the protein. The bendability of DNA with different sequences at these bend centres parallels the bending preference of the sequences in nucleosomal DNA. Anisotropic DNA bendability significantly affects the structure and strength of regulatory protein –DNA complexes.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 51 print issues and online access
$199.00 per year
only $3.90 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
Fried, M. G. & Crothers, D. M. Nucleic Acids Res. 11, 141–158 (1983).
Kolb, A., Spassky, A., Chapon, C., Blazy, B. & Buc, H. Nucleic Acids Res. 11, 7833–7852 (1983).
Wu, H.-M. & Crothers, D. M. Nature 308, 509–513 (1984).
Kotlarz, D., Fritsch, A. & Buc, H. EMBO J. 5, 799–803 (1986).
Dripps, D. & Wartell, R. M. J. Biomolec. struct. Dyn. 5, 1–13 (1987).
Porschke, D., Hillen, W. & Takahashi, M. EMBO J. 3, 2873–2878 (1984).
Weber, I. T. & Steitz, T. A. Proc. natn. Acad. Sci. U.S.A. 81, 3973–3977 (1984).
Waricker, J., Engleman, B. P. & Steitz, T. A. Proteins 2, 283–289 (1987).
Shuey, D. J. & Parker, C. S. 323, 459–462 (1986).
Kunke, G., Fritz, H.-J. & Ehring, R. EMBO J. 6, 507–513 (1987).
Mukherjee, S., Parel, I. & Bastia, D. Cell 43, 189–197 (1985).
Ryder, K., Silver, S., Delucia, A. L., Fanning, E. & Tegtmeyer, P. Cell 44, 719–725 (1986).
Zahn, K. & Blattner, F. R. Science 236, 416–422 (1987).
Hatfull, G. F., Noble, S. Z. & Grindley, N. D. F. Cell 49, 103–110 (1987).
Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D. & Klug, A. Nature 311, 532–537 (1984).
McClarin, T. A. et al. Science 234, 1526–1541 (1986).
Anderson, J. E., Ptashne, M. & Harrison, S. C. Nature 326, 846–852 (1987).
Liu-Johnson, H.-N., Gartenberg, M. R. & Crothers, D. M. Cell 47, 995–1005 (1986).
Drew, H. R., & Travers, A. A. J. molec. Biol. 186, 773–790 (1985).
Satchwell, S. C., Drew, H. R. & Travers, A. A. J. molec. Biol. 191, 659–675 (1986).
Koudelka, G. B., Harrison, S. B. & Ptashne, M. Nature 326, 886–888 (1987).
Hogan, M. E. & Austin, R. H. Nature 329, 263–266 (1987).
deCrombrugghe, B., Busby, S. & Buc, H. Science 224, 831–838 (1984).
Majors, J. thesis, Harvard Univ. (1977).
Ebright, R. H., Cossart, P., Gicquel-Sanzey, B. & Beckwith, J. Nature 311, 232–235 (1984).
Ebright, R. H. et al. Proc. natn. Acad. Sci. U.S.A. 84, 6083–6087 (1987).
Calladine, C. R. & Drew, H. R. J. molec. Biol. 192, 907–918 (1986).
Travers, A. & Klug, A. Nature 327, 280–281 (1987).
Wells, J. A., Vasser, M. & Powers, D. B. Gene 34, 315–323 (1985).
Lerman, L. S. & Frisch, H. L. Biopolymers 21, 995–997 (1982).
Lumpkin, O. J. & Zimm, B. H. Bioploymers 21, 2315–2316 (1982).
Zinkel, S. S. & Crothers, D. M. Nature 328, 178–181 (1987).
McKay, D. B. & Steitz, T. A. Nature 290, 744–749 (1981).
Anderson, W. F., Ohlendorf, D. H., Takeda, Y. & Matthews, B. W. Nature 290, 754–758 (1981).
Pabo, C. O. & Lewis, M. Nature 298, 443–447 (1982).
Stormo, G. D., Schneider, T. D. & Gold, L. Nucleic Acids Res. 14, 6661–6679 (1986).
Gray, D. M. & Tinoco, I. Jr Biopolymers 9, 223–244 (1970).
Trifonov, E. N. CRC Crit. Rev. Biochem. 9, 89–106 (1985).
Fried, M. G. & Crothers, D. M. Nucleic Acids Res. 9, 6505–6525 (1981).
Garner, M. M. & Revzin, A. Nucleic Acids Res. 9, 3047–3060 (1981).
Levene, S. D., Wu, H.-M. & Crothers, D. M. Biochemistry 25, 3988–3995 (1986).
Koo, H.-S. thesis Yale Univ. (1987).
Drew, H. R. & Calladine, C. R. J. molec. Biol. 195, 143–173 (1987).
Low, L., Drew, H. R. & Waring, M. Nucleic Acids Res. 14, 6785–6801 (1986).
Malan, T. P., Kolb, A., Buc, H. & McClure, W. R. J. molec. Biol. 180, 881–909 (1984).
Buc, H. et al. in RNA Polymerases and the Regulation of Transcription (eds Reznikoff, W. S. et al.) 115–125 (Elsevier, Amsterdam, 1987).
Griffith, J., Bleyman, M., Rauch, C. A., Kitchin, P. A. & England, P. A. Cell 46, 717–724 (1986).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Gartenberg, M., Crothers, D. DNA sequence determinants of CAP-induced bending and protein binding affinity. Nature 333, 824–829 (1988). https://doi.org/10.1038/333824a0
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1038/333824a0
This article is cited by
-
cAMP Activation of the cAMP Receptor Protein, a Model Bacterial Transcription Factor
Journal of Microbiology (2023)
-
PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli
Scientific Reports (2018)
-
Structural features of DNA that determine RNA polymerase II core promoter
BMC Genomics (2016)
-
Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects
Biophysical Reviews (2016)
-
Protein-induced DNA linking number change by sequence-specific DNA binding proteins and its biological effects
Biophysical Reviews (2016)
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.