Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Comparison of theory to experiment for DNA thermal denaturation

Abstract

THEORETICAL profiles of the thermal denaturation of random sequence DNA that were calculated by Frank-Kamenetskii and Vologodskii1 displayed a number of narrow subtransitions. In several ways these subtransitions resembled the thermalities observed experimentally in derivative denaturation profiles2–7. Lyubchenko et al.8 extended their theoretical work to include the known sequence of ΦX174 DNA and claim that not only the shape of prominent subtransitions, but also the number and denaturation temperatures are essentially the same for both calculated and observed denaturation profiles. We suggest that the agreement between current theory and experiment is not as satisfactory as has been implied, and that at least one critical parameter has been neglected in the theory and ignored in the discussions of Lyubchenko et al.8.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Frank-Kamenetskii, M. D. & Vologodskii, A. V. Nature 269, 729–730 (1977).

    Article  ADS  CAS  Google Scholar 

  2. Vizard, D. L. & Ansevin, A. T. Biochemistry 15, 741–750 (1976).

    Article  CAS  Google Scholar 

  3. Ansevin, A. T., Vizard, D. L., Brown, B. W. & McConathy, J. Biopolymers 15, 153–174 (1976).

    Article  CAS  Google Scholar 

  4. Wada, A., Tachibana, H., Veno, S., Husimi, V. & Machida, Y. Nature 269, 352–353 (1977).

    Article  ADS  CAS  Google Scholar 

  5. Gotoh, O., Husimi, Y., Yabuki, S. & Wada, A. Biopolymers 15, 655–670 (1976).

    Article  CAS  Google Scholar 

  6. Wada, A., Tachibana, A., Gotoh, O. & Takanami, M. Nature 263, 439–440 (1976).

    Article  ADS  CAS  Google Scholar 

  7. Lyubchenko, Y. L., Frank-Kamenetskii, M. D., Vologodskii, A. V., Lazurkin, Yu. S. & Gauze, G. C., Jr Biopolymers 15, 1019–1036 (1976).

    Article  CAS  Google Scholar 

  8. Lyubchenko, Y. L., Vologodskii, A. V. & Frank-Kamenetskii, M. D. Nature 271, 28–31 (1978).

    Article  ADS  CAS  Google Scholar 

  9. Sanger, F. et al. Nature 265, 687–695 (1977).

    Article  ADS  CAS  Google Scholar 

  10. Fixman, M. & Freire, J. J. Biopolymers 16, 2693–2704 (1977).

    Article  CAS  Google Scholar 

  11. Poland, D. Biopolymers 13, 1859–1871 (1974).

    Article  CAS  Google Scholar 

  12. Gruenwedel, D. W. Biochim. biophys. Acta 340, 16–30 (1974).

    Article  CAS  Google Scholar 

  13. Wartell, R. M. Biopolymers 16, 1115–1137 (1977).

    Article  Google Scholar 

  14. Borer, P., Dengler, B. & Tinoco, I. J. molec. Biol. 86, 843–853 (1974).

    Article  CAS  Google Scholar 

  15. Gray, H. B., Jr, Ostrander, D. A., Hodnett, J. L., Legerski, R. J. & Robberson, D. L. Nucleic Acids Res. 2, 1459–1492 (1975).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

VIZARD, D., WHITE, R. & ANSEVIN, A. Comparison of theory to experiment for DNA thermal denaturation. Nature 275, 250–251 (1978). https://doi.org/10.1038/275250a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/275250a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing