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Chromatin modifications integrate cis genomic context to instruct transcriptional outputs

By developing a modular system for precision epigenome editing, we were able to delineate the causal and quantitative role of chromatin modifications in transcription regulation. The precise effect of chromatin modifications is influenced by multiple contextual factors, including the underlying DNA sequence, transcription factor occupancy and genomic positioning.

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Fig. 1: A flexible system for testing the causal role of epigenetic marks in transcription regulation.

References

  1. Atlasi, Y. & Stunnenberg, H. G. The interplay of epigenetic marks during stem cell differentiation and development. Nat. Rev. Genet. 18, 643–658 (2017). A review article that describes the dynamics and the relative contribution of key epigenetic marks during development and stem cell differentiation.

    Article  CAS  PubMed  Google Scholar 

  2. Cavalli, G. & Heard, E. Advances in epigenetics link genetics to the environment and disease. Nature 571, 489–499 (2019). A comprehensive review that discusses the role of epigenetic marks in cellular memory and plasticity, as well as the interplay between epigenetics and environment.

    Article  CAS  PubMed  Google Scholar 

  3. Moosavi, A. & Motevalizadeh Ardekani, A. Role of epigenetics in biology and human diseases. Iran Biomed. J. 20, 246–258 (2016). A summary article that considers the role of epigenetics in human diseases.

    PubMed  PubMed Central  Google Scholar 

  4. Stricker, S. H., Köferle, A. & Beck, S. From profiles to function in epigenomics. Nat. Rev. Genet. 18, 51–66 (2017). A review that explains the challenges of attributing a causal role to epigenetic marks in genome regulation.

    Article  CAS  PubMed  Google Scholar 

  5. Holtzman, L. & Gersbach, C. A. Editing the epigenome: reshaping the genomic landscape. Annu. Rev. Genomics Hum. Genet. 19, 43–71 (2018). A review article that highlights the caveats and promises of the emerging field of epigenome editing.

    Article  CAS  PubMed  Google Scholar 

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This is a summary of: Policarpi, C. et al. Systematic epigenome editing captures the context-dependent instructive function of chromatin modifications. Nat. Genet. https://doi.org/10.1038/s41588-024-01706-w (2024).

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Chromatin modifications integrate cis genomic context to instruct transcriptional outputs. Nat Genet (2024). https://doi.org/10.1038/s41588-024-01705-x

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