Microbiology articles within Scientific Reports

Featured

• Article
  09 December 2023 | Open Access

  Unravelling the impact of fat content on the microbial dynamics and spatial distribution of foodborne bacteria in tri-phasic viscoelastic 3D models

  • Lisa Purk
  • , Melina Kitsiou
  •  & Eirini G. Velliou

• Article
  09 December 2023 | Open Access

  Streamlined instrument-free lysis for the detection of Candida auris

  • Mei Jin
  • , Alexander Y. Trick
  •  & Tza-Huei Wang

• Article
  09 December 2023 | Open Access

  Pan msr gene deleted strain of Salmonella Typhimurium suffers oxidative stress, depicts macromolecular damage and attenuated virulence

  • Raj Sahoo
  • , Tapan Kumar Singh Chauhan
  •  & Manish Mahawar

• Article
  09 December 2023 | Open Access

  Genome sequence and characterization of a novel Pseudomonas putida phage, MiCath

  • James Jaryenneh
  • , Joseph S. Schoeniger
  •  & Catherine M. Mageeney

• Article
  09 December 2023 | Open Access

  Staphylococcus epidermidis is a safer surrogate of Staphylococcus aureus in testing bacterial filtration efficiency of face masks

  • Silvia Chiera
  • , Francesca Bosco
  •  & Francesco Tessarolo

• Article
  09 December 2023 | Open Access

  A bead-based multiplex assay covering all coronaviruses pathogenic for humans for sensitive and specific surveillance of SARS-CoV-2 humoral immunity

  • Daniel Stern
  • , Tanja C. Meyer
  •  & Brigitte G. Dorner

• Article
  09 December 2023 | Open Access

  Multiple host colonization and differential expansion of multidrug-resistant ST25-Acinetobacter baumannii clades

  • Agnese Lupo
  • , Benoît Valot
  •  & Anaïs Potron

• Article
  08 December 2023 | Open Access

  Metagenomics reveals effects of fluctuating water conditions on functional pathways in plant litter microbial community

  • Matevž Likar
  • , Mateja Grašič
  •  & Alenka Gaberščik

• Article
  08 December 2023 | Open Access

  Rotavirus genotype diversity in Tanzania during Rotavirus vaccine implementation between 2013 and 2018

  • Fausta Michael
  • , Mariam M. Mirambo
  •  & Stephen E. Mshana

• Article
  08 December 2023 | Open Access

  Isolation, identification and pathogenicity of local entomopathogenic bacteria as biological control agents against the wild cochineal Dactylopius opuntiae (Cockerell) on cactus pear in Morocco

  • Karim El Fakhouri
  • , Chaimae Ramdani
  •  & Issam Meftah Kadmiri

• Article
  08 December 2023 | Open Access

  Genomic surveillance of SARS-CoV-2 reveals highest severity and mortality of delta over other variants: evidence from Cameroon

  • Joseph Fokam
  • , Rene Ghislain Essomba
  •  & Carole Eboumbou

• Article
  07 December 2023 | Open Access

  First isolation of Mycobacterium saskatchewanense from medical devices

  • Francesco Bisognin
  • , Vincenzo Ferraro
  •  & Paola Dal Monte

• Article
  07 December 2023 | Open Access

  Fusarium kuroshium is the primary fungal symbiont of an ambrosia beetle, Euwallacea fornicatus, and can kill mango tree in Japan

  • Zi-Ru Jiang
  • , Momo Tanoue
  •  & Hisashi Kajimura

• Article
  07 December 2023 | Open Access

  Selective digestive tract decontamination to prevent healthcare associated infections in critically ill children: the PICNIC multicentre randomised pilot clinical trial

  • Nazima Pathan
  • , Kerry Woolfall
  •  & Francesca Moody

• Article
  07 December 2023 | Open Access

  Infection of wild-caught wood mice (Apodemus sylvaticus) and yellow-necked mice (A. flavicollis) with tick-borne encephalitis virus

  • Julian W. Bakker
  • , Emily L. Pascoe
  •  & Constantianus J. M. Koenraadt

• Article
  07 December 2023 | Open Access

  GC-MS profiling of Pistachio vera L., and effect of antioxidant and antimicrobial compounds of it's essential oil compared to chemical counterparts

  • Fatemeh Shahdadi
  • , Sepideh Khorasani
  •  & R. Z. Sayyed

• Article
  07 December 2023 | Open Access

  Comparison of three different lactic acid bacteria-fermented proteins on RAW 264.7 osteoclast and MC3T3-E1 osteoblast differentiation

  • Jae-Young Kim
  • , Hyun Ji Song
  •  & Sae Hun Kim

• Article
  07 December 2023 | Open Access

  Functional and genomic characterization of a novel probiotic Lactobacillus johnsonii KD1 against shrimp WSSV infection

  • Kanokwan Dekham
  • , Samuel Merryn Jones
  •  & Soraya Chaturongakul

• Article
  07 December 2023 | Open Access

  The study on the effect of mercury pollution on soil microorganisms around mercury mining area

  • Jianxiong Du
  • , Yuxiang Ren
  •  & Jie Liu

• Article
  06 December 2023 | Open Access

  Chlamydophila pneumoniae-associated community-acquired pneumonia in paediatric patients of a tertiary care hospital in Mexico: molecular diagnostic and clinical insights

  • Jocelin Merida Vieyra
  • , Agustín De Colsa Ranero
  •  & Alejandra Aquino Andrade

• Article
  06 December 2023 | Open Access

  Cu₂O, ZnO, and Ag/ Cu₂O nanoparticles synthesized by biogenic and chemical route and their effect on Pseudomonas aeruginosa and Candida albicans

  • J. Rojas-Jaimes
  •  & David Asmat-Campos

• Article
  06 December 2023 | Open Access

  Synergistic antibacterial effects of exopolysaccharides/nickel-nanoparticles composites against multidrug-resistant bacteria

  • Javier A. Garza-Cervantes
  • , Gricelda Mendiola-Garza
  •  & José Rubén Morones-Ramírez

• Article
  06 December 2023 | Open Access

  A natural product YSK-A blocks SARS-CoV-2 propagation by targeting multiple host genes

  • Thuy X. Pham
  • , Trang T. X. Huynh
  •  & Soon B. Hwang

• Article
  06 December 2023 | Open Access

  Variation in presepsin and thrombomodulin levels for predicting COVID-19 mortality

  • Azusa Yamazaki
  • , Yoko Nukui
  •  & Ryunosuke Ohkawa

• Article
  06 December 2023 | Open Access

  A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region

  • Yvette Unoarumhi
  • , Morgan L. Davis
  •  & Bernard Beall

• Article
  06 December 2023 | Open Access

  Effect of glyphosate on the growth and survival of rhizobia isolated from root nodules of grass pea (Lathyrus sativus L.)

  • Atrsaw Asrat
  • , Baye Sitotaw
  •  & Gezahign Fentahun Wondmie

• Article
  06 December 2023 | Open Access

  Microbial and potentially toxic elements risk assessment in high Andean river water based on Monte Carlo simulation, Peru

  • María Custodio
  • , Richard Peñaloza
  •  & Walter Cuadrado

• Editorial
  05 December 2023 | Open Access

  Guest edited collection: fungal evolution and diversity

  There are 5 million fungal species. However, the discovery and classification of fungi are in high flux. Modern concepts indicate that the three kingdoms of “fungi” are Chromista, Fungi and Protozoa. Strong support for the wrong phylogeny can occur without correct analytical methods. In the current Collection we envisaged fungi representing extremely diverse and ancient eukaryotic organisms, with familiar groups such as mushrooms, yeasts and “moulds”. We collected 6 fascinating papers in three areas of Diversity, Chemical Diversity and Evolution.

  • Robert Russell Monteith Paterson
  • , Zakaria Solaiman
  •  & Oscar Santamaria

• Article
  04 December 2023 | Open Access

  Nanofluidic qPCR unable to detect and serotype Streptococcus pneumoniae in urine samples of hospitalized South African patients with community-acquired pneumonia

  • Courtney P. Olwagen
  • , Tariro R. Jeche
  •  & Vicky L. Baillie

• Article
  04 December 2023 | Open Access

  Effectiveness of VSV vectored SARS-CoV-2 spike when administered through intranasal, intramuscular or a combination of both

  • Saina Beitari
  • , Gerard Agbayani
  •  & Anh Tran

• Article
  04 December 2023 | Open Access

  In silico drug repurposing carvedilol and its metabolites against SARS-CoV-2 infection using molecular docking and molecular dynamic simulation approaches

  • Chunye Zhang
  • , Jiazheng Liu
  •  & Ming Yang

• Article
  04 December 2023 | Open Access

  Metagenomic sequencing detects human respiratory and enteric viruses in air samples collected from congregate settings

  • Nicholas R. Minor
  • , Mitchell D. Ramuta
  •  & David H. O’Connor

• Article
  04 December 2023 | Open Access

  Evaluation of building washing machines as an extreme environment for potentially pathogenic fungi

  • Zahra Zareshahrabadi
  • , Neda Amirzadeh
  •  & Kamiar Zomorodian

• Article
  04 December 2023 | Open Access

  Molecular epidemiology and drug sensitivity of Mycobacterium tuberculosis in homeless individuals in the Addis Ababa city, Ethiopia

  • Tsegaye Shamebo
  • , Balako Gumi
  •  & Gobena Ameni

• Article
  04 December 2023 | Open Access

  Impact of chitosan-incorporated toothpaste on roughness, gloss, and antifungal potential of acrylic resin

  • Kaye Varaschin Theodorovicz
  • , Waldemir Franscisco Vieira-Junior
  •  & Núbia Inocencya Pavesi Pini

• Article
  03 December 2023 | Open Access

  Forecasting local hospital bed demand for COVID-19 using on-request simulations

  • Raisa Kociurzynski
  • , Angelo D’Ambrosio
  •  & Tjibbe Donker

• Article
  02 December 2023 | Open Access

  Methane prediction equations including genera of rumen bacteria as predictor variables improve prediction accuracy

  • Boyang Zhang
  • , Shili Lin
  •  & Zhongtang Yu

• Article
  02 December 2023 | Open Access

  Alterations in gastric and gut microbiota following sleeve gastrectomy in high-fat diet-induced obese rats

  • Young Suk Park
  • , Kung Ahn
  •  & Yong Ju Ahn

• Article
  02 December 2023 | Open Access

  Genomic analysis of Coccomyxa viridis, a common low-abundance alga associated with lichen symbioses

  • Gulnara Tagirdzhanova
  • , Klara Scharnagl
  •  & Nicholas J. Talbot

• Article
  01 December 2023 | Open Access

  Infectivity of exhaled SARS-CoV-2 aerosols is sufficient to transmit covid-19 within minutes

  • Malin Alsved
  • , Kristina Nyström
  •  & Jakob Löndahl

• Article
  01 December 2023 | Open Access

  Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits

  • Simon Yersin
  • , Julian R. Garneau
  •  & Pascale Vonaesch

• Article
  01 December 2023 | Open Access

  Epidemiology and genetic diversity of Streptococcus suis in smallhold swine farms in the Philippines

  • Susan A. Sedano
  • , Mary Grace Concepcion T. Cantalejo
  •  & Benji Brayan Ilagan Silva

• Article
  30 November 2023 | Open Access

  Seropositivity of Borrelia burgdorferi s.l. in Germany—an analysis across four German National Cohort (NAKO) study sites

  • Max J. Hassenstein
  • , Tobias Pischon
  •  & Stefanie Castell

• Article
  30 November 2023 | Open Access

  Research on the stipe cracking of wine-cap mushroom (Stropharia rugosoannulata) in different humidity conditions

  • Lei Huang
  • , Can Si
  •  & Jun Duan

• Article
  30 November 2023 | Open Access

  The effects of exposure to O₂- and HOCl-nanobubble water on human salivary microbiota

  • Ken Sagara
  • , Shota Kataoka
  •  & Toshihiro Ansai

• Article
  30 November 2023 | Open Access

  Optimizing the microbial synthesis of silver nanoparticles using Gloeophyllum striatum and their antimicrobial potential evaluation

  • Aleksandra Tończyk
  • , Katarzyna Niedziałkowska
  •  & Katarzyna Lisowska

• Article
  30 November 2023 | Open Access

  Extraction-free LAMP assays for generic detection of Old World Orthopoxviruses and specific detection of Mpox virus

  • Zhiru Li
  • , Amit Sinha
  •  & Clotilde K. S. Carlow

• Article
  30 November 2023 | Open Access

  Characterization and nutritional valorization of agricultural waste corncobs from Italian maize landraces through the growth of medicinal mushrooms

  • G. Castorina
  • , C. Cappa
  •  & D. Erba

• Article
  29 November 2023 | Open Access

  Molecular epidemiology, clinical analysis, and genetic characterization of Zika virus infections in Thailand (2020–2023)

  • Sarawut Khongwichit
  • , Watchaporn Chuchaona
  •  & Yong Poovorawan

• Article
  29 November 2023 | Open Access

  Distance and destination of retail meat alter multidrug resistant contamination in the United States food system

  • Gabriel K. Innes
  • , Andrew N. Patton
  •  & Meghan F. Davis