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| Open AccessPredicting early Alzheimer’s with blood biomarkers and clinical features
- Muaath Ebrahim AlMansoori
- , Sherlyn Jemimah
- & Aamna AlShehhi
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| Open AccessHSV1 microRNAs in glioblastoma development: an in silico study
- Mahdi Abdoli Shadbad
- , Nima Hemmat
- & Behzad Baradaran
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| Open AccessIntegrated whole transcriptome profiling revealed a convoluted circular RNA-based competing endogenous RNAs regulatory network in colorectal cancer
- Hasan Mollanoori
- , Yaser Ghelmani
- & Mohammadreza Dehghani
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| Open AccessA rapid and reference-free imputation method for low-cost genotyping platforms
- Vinh Chi Duong
- , Giang Minh Vu
- & Tham Hong Hoang
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| Open AccessTrehalose metabolism coordinates transcriptional regulatory control and metabolic requirements to trigger the onset of cassava storage root initiation
- Nattavat Sukko
- , Saowalak Kalapanulak
- & Treenut Saithong
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| Open AccessAnoikis-related genes signature development for clear cell renal cell carcinoma prognosis and tumor microenvironment
- Yinglei Jiang
- , Ying Wang
- & Xukai Wang
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| Open AccessEnhancing cancer treatment and understanding through clustering of gene responses to categorical stressors
- Christopher El Hadi
- , George Hilal
- & Rita Aoun
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| Open AccessFactor-specific generative pattern from large-scale drug-induced gene expression profile
- Se Hwan Ahn
- & Ju Han Kim
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| Open AccessInference of transcriptome signatures of Escherichia coli in long-term stationary phase
- Sotaro Takano
- , Hiromi Takahashi
- & Saburo Tsuru
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| Open AccessNetwork-level analysis of ageing and its relationship with diseases and tissue regeneration in the mouse liver
- Manisri Porukala
- & P. K. Vinod
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| Open AccessIntegrated multi-omics analysis of Alzheimer’s disease shows molecular signatures associated with disease progression and potential therapeutic targets
- Pradeep Kodam
- , R. Sai Swaroop
- & Ramakrishna Vadrevu
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| Open AccessDeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics
- Alok Sharma
- , Artem Lysenko
- & Tatsuhiko Tsunoda
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Article
| Open AccessIdentification of essential genes and immune cell infiltration in rheumatoid arthritis by bioinformatics analysis
- You Ao
- , Zhongbo Wang
- & Wei Zhang
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| Open AccessIdentification and immune features of cuproptosis-related molecular clusters in polycystic ovary syndrome
- Zhe Su
- , Wenjing Su
- & Yanlin Wang
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| Open AccessCharacteristics of immune clusters and cell abundance in patients with different subtypes of nonparoxysmal atrial fibrillation
- Hangying Ying
- , Wenpu Guo
- & Chenyang Jiang
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| Open AccessPatient-specific identification of genome-wide DNA-methylation differences between intracranial and extracranial melanoma metastases
- Theresa Kraft
- , Konrad Grützmann
- & Michael Seifert
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Article
| Open AccessBinding epitope for recognition of human TRPM4 channel by monoclonal antibody M4M
- Shunhui Wei
- , Julian Behn
- & Ping Liao
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| Open AccessCo-alterations of circadian clock gene transcripts in human placenta in preeclampsia
- Guoli Zhou
- , Emily Winn
- & Hanne M. Hoffmann
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| Open AccessComparative transcriptomic analysis of whole blood mycobacterial growth assays and tuberculosis patients’ blood RNA profiles
- Petra Bachanová
- , Ashleigh Cheyne
- & Myrsini Kaforou
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Article
| Open AccessIntegrated network-based multiple computational analyses for identification of co-expressed candidate genes associated with neurological manifestations of COVID-19
- Suvojit Hazra
- , Alok Ghosh Chaudhuri
- & Nilkanta Chakrabarti
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| Open AccessIdentification and verification of CCNB1 as a potential prognostic biomarker by comprehensive analysis
- Yinzhen Zeng
- & Rong Fan
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| Open AccessIdentification of key candidate genes for IgA nephropathy using machine learning and statistics based bioinformatics models
- Md. Al Mehedi Hasan
- , Md. Maniruzzaman
- & Jungpil Shin
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| Open AccessGene Updater: a web tool that autocorrects and updates for Excel misidentified gene names
- Clara W. T. Koh
- , Justin S. G. Ooi
- & Kuan Rong Chan
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| Open AccessComprehensive multi-cohort transcriptional meta-analysis of muscle diseases identifies a signature of disease severity
- C. J. Walsh
- , J. Batt
- & C. C. dos Santos
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| Open AccessMALAT1 as master regulator of biomarkers predictive of pan-cancer multi-drug resistance in the context of recalcitrant NRAS signaling pathway identified using systems-oriented approach
- Santosh Kumar
- & Seema Mishra
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| Open AccessMulti-staged gene expression profiling reveals potential genes and the critical pathways in kidney cancer
- Hamed Ishaq Khouja
- , Ibraheem Mohammed Ashankyty
- & Mohammad Mobashir
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| Open AccessTemporal and sex-dependent gene expression patterns in a renal ischemia–reperfusion injury and recovery pig model
- Stéphane Nemours
- , Luis Castro
- & Anna Meseguer
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| Open AccessA novel liver cancer diagnosis method based on patient similarity network and DenseGCN
- Ge Zhang
- , Zhen Peng
- & Huimin Luo
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| Open AccessComprehensive analysis of epigenetics regulation, prognostic and the correlation with immune infiltrates of GPX7 in adult gliomas
- Wallax Augusto Silva Ferreira
- , Glauco Akelinghton Freire Vitiello
- & Edivaldo Herculano Correa de Oliveira
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| Open AccessNovel cancer subtyping method based on patient-specific gene regulatory network
- Mai Adachi Nakazawa
- , Yoshinori Tamada
- & Yasushi Okuno
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| Open AccessDrug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis
- Habib MotieGhader
- , Esmaeil Safavi
- & Roya asl Iranifam
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| Open AccessBand-based similarity indices for gene expression classification and clustering
- Aurora Torrente
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| Open AccessMeta-analysis of gene expression disease signatures in colonic biopsy tissue from patients with ulcerative colitis
- Bryan Linggi
- , Vipul Jairath
- & Niels Vande Casteele
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| Open AccessGene expression profile of the murine ischemic retina and its response to Aflibercept (VEGF-Trap)
- Jesús Eduardo Rojo Arias
- & József Jászai
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| Open AccessIntegrating ensemble systems biology feature selection and bimodal deep neural network for breast cancer prognosis prediction
- Li-Hsin Cheng
- , Te-Cheng Hsu
- & Che Lin
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| Open AccessThe amniotic fluid cell-free transcriptome in spontaneous preterm labor
- Gaurav Bhatti
- , Roberto Romero
- & Adi L. Tarca
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| Open AccessInteraction of genetic and environmental factors for body fat mass control: observational study for lifestyle modification and genotyping
- Joon Ho Kang
- , Heewon Kim
- & Woong-Yang Park
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Article
| Open Accesshsp-90 and unc-45 depletion induce characteristic transcriptional signatures in coexpression cliques of C. elegans
- Lukas Schmauder
- & Klaus Richter
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| Open AccessPopulation-based serology reveals risk factors for RSV infection in children younger than 5 years
- Stijn P. Andeweg
- , Rutger M. Schepp
- & Michiel van Boven
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| Open AccessIdentification of genes associated with altered gene expression and m6A profiles during hypoxia using tensor decomposition based unsupervised feature extraction
- Sanjiban Sekhar Roy
- & Y.-H. Taguchi
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| Open AccessInvestigation of MicroRNA and transcription factor mediated regulatory network for silicosis using systems biology approach
- J. K. Choudhari
- , M. K. Verma
- & B. P. Sahariah
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| Open AccessPrognostic gene expression signatures of breast cancer are lacking a sensible biological meaning
- Kalifa Manjang
- , Shailesh Tripathi
- & Frank Emmert-Streib
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| Open AccessThe effect of hypoxia on the proteomic signature of pig adipose-derived stromal/stem cells (pASCs)
- Joanna Bukowska
- , Mariola Słowińska
- & Barbara Gawrońska-Kozak
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| Open AccessGIANT: galaxy-based tool for interactive analysis of transcriptomic data
- Jimmy Vandel
- , Céline Gheeraert
- & Julie Dubois-Chevalier
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| Open AccessSpatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing
- Travis S. Johnson
- , Shunian Xiang
- & Jie Zhang
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| Open AccessEpigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
- Nathalie Acevedo
- , Rui Benfeitas
- & Annika Scheynius
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| Open AccessPerturbation-based gene regulatory network inference to unravel oncogenic mechanisms
- Daniel Morgan
- , Matthew Studham
- & Erik L. L. Sonnhammer
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| Open AccessDetecting ulcerative colitis from colon samples using efficient feature selection and machine learning
- Hanieh Marvi Khorasani
- , Hamid Usefi
- & Lourdes Peña-Castillo
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| Open AccessTranscriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
- Prithvi Singh
- , Archana Sharma
- & Mansoor Ali Syed