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Article
| Open AccessThe complex polyploid genome architecture of sugarcane
We build a polyploid reference genome for hybrid sugarcane cultivar R570, improving on its current ‘mosaic monoploid’ representation, enabling fine-grain description of genome architecture and the exploration of candidate genes underlying the Bru1 brown rust resistance locus.
- A. L. Healey
- , O. Garsmeur
- & A. D’Hont
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Article |
Targeting DCAF5 suppresses SMARCB1-mutant cancer by stabilizing SWI/SNF
DCAF5 has a quality-control function for SWI/SNF complexes and promotes the degradation of incompletely assembled SWI/SNF complexes in the absence of SMARCB1.
- Sandi Radko-Juettner
- , Hong Yue
- & Charles W. M. Roberts
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News |
Pregnancy advances your ‘biological’ age — but giving birth turns it back
Carrying a baby creates some of the same epigenetic patterns on DNA seen in older people.
- Saima Sidik
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Technology Feature |
One year, three researchers, millions of cells: how a small team created the largest mouse-embryo atlas so far
A map of mouse development from conception to birth tracks 12.4 million cells at single-cell resolution as they mature into organs and other tissues.
- Sara Reardon
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Research Briefing |
Neuron migration to brain regions key to memory and navigation continues into childhood
This study identifies a major migratory route for young neurons in the brains of young children. This route forms during pregnancy and links the birthplace of these nerve cells to their destination in highly interconnected brain regions that are responsible for memory and spatial processing.
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News |
Ancient malaria genome from Roman skeleton hints at disease’s history
Genetic information from ancient remains is helping to reveal how malaria has moved and evolved alongside people.
- Tosin Thompson
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Article
| Open AccessSpatially organized cellular communities form the developing human heart
Combining single-cell RNA-sequencing with high-resolution multiplexed error-robust fluorescence in situ hybridization reveals in detail the cellular interactions and specialization of cardiac cell types that form and remodel the human heart.
- Elie N. Farah
- , Robert K. Hu
- & Neil C. Chi
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Correspondence |
On the ethics of informed consent in genetic data collected before 1997
- Martin Zieger
- , Yann Joly
- & Maria Eugenia D’Amato
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Article
| Open AccessSelfish conflict underlies RNA-mediated parent-of-origin effects
In Caenorhabditis tropicalis, selective expression of genetic alleles from one parent but not the other can arise from maternally inherited small transcripts acting via the PIWI-interacting RNA host defence pathway.
- Pinelopi Pliota
- , Hana Marvanova
- & Alejandro Burga
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News & Views |
Mammalian cells repress random DNA that yeast transcribes
In experiments dubbed the Random Genome Project, researchers have integrated DNA strands with random sequences into yeast and mouse cells to find the default transcriptional state of their genomes.
- Sean R. Eddy
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News |
Oldest stone tools in Europe hint at ancient humans’ route there
Dating of artefacts found at a site in western Ukraine suggests that archaic humans had entered Europe’s eastern gate by 1.4 million years ago.
- Giorgia Guglielmi
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Article
| Open AccessGenome-wide characterization of circulating metabolic biomarkers
A meta-analysis of genome-wide association studies for 233 circulating metabolites from 33 cohorts reveals more than 400 loci and suggests probable causal genes, providing insights into metabolic pathways and disease aetiology.
- Minna K. Karjalainen
- , Savita Karthikeyan
- & Johannes Kettunen
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Article
| Open AccessA concerted neuron–astrocyte program declines in ageing and schizophrenia
A synaptic neuron and astrocyte program (SNAP) varies among healthy humans, may shape interindividual differences in synapses and plasticity, and is undermined in schizophrenia and with advancing age.
- Emi Ling
- , James Nemesh
- & Steven A. McCarroll
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Article
| Open AccessSynthetic reversed sequences reveal default genomic states
Introduction of a long synthetic DNA into yeast genomic loci results in high default transcriptional activity in yeast but low activity in mouse, suggesting distinct default levels of genomic activity in these organisms.
- Brendan R. Camellato
- , Ran Brosh
- & Jef D. Boeke
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News |
Genetics solves mystery of rare brown pandas after 40 years
Chinese researchers find the gene responsible for the brown-and-white fur of a handful of giant pandas in China.
- Xiaoying You
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News |
Oldest known animal sex chromosome evolved in octopuses 380 million years ago
Result reveals for the first time how some cephalopods determine sex.
- Carissa Wong
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Nature Podcast |
Could this one-time ‘epigenetic’ treatment control cholesterol?
Regulating gene expression lowers blood cholesterol in mice, and how the Universe’s cosmic fog was lifted.
- Nick Petrić Howe
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News |
‘Epigenetic’ editing cuts cholesterol in mice
Changes to chemical tags on DNA in mice dial down the activity of a gene without cuts to the genome.
- Heidi Ledford
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Spotlight |
Stealthy stem cells to treat disease
Gene-editing strategies that allow stem cells to evade the immune system offer hope for universal cell-replacement therapies.
- Elie Dolgin
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News & Views |
A mobile DNA sequence could explain tail loss in humans and apes
The lack of a tail is one thing that separates apes — including humans — from other primates. Insertion of a short DNA sequence into a gene that controls tail development could explain tail loss in the common ancestor of apes.
- Miriam K. Konkel
- & Emily L. Casanova
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Article
| Open AccessDurable and efficient gene silencing in vivo by hit-and-run epigenome editing
Experiments in mice show that designed epigenome editors that contain domains of transcriptional repressors can enable stable epigenetic silencing of Pcsk9, a gene with a role in cholesterol homeostasis, without inducing DNA breaks.
- Martino Alfredo Cappelluti
- , Valeria Mollica Poeta
- & Angelo Lombardo
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Article
| Open AccessOn the genetic basis of tail-loss evolution in humans and apes
An insertion of an Alu element into an intron of the TBXT gene is identified as a genetic mechanism of tail-loss evolution in humans and apes, with implications for human health today.
- Bo Xia
- , Weimin Zhang
- & Itai Yanai
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News |
The surprising link between gut bacteria and devastating eye diseases
Finding raises hopes that antibiotics could treat some genetic diseases that can cause blindness — but also prompts doubts.
- Saima Sidik
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News |
‘All of Us’ genetics chart stirs unease over controversial depiction of race
Debate over figure connecting genes, race and ethnicity reignites concerns among geneticists about how to represent human diversity.
- Max Kozlov
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News |
Why citizen scientists are gathering DNA from hundreds of lakes — on the same day
Massive environmental DNA project will take a record-setting snapshot of biodiversity worldwide.
- Lydia Larsen
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Technology Feature |
Super-speedy sequencing puts genomic diagnosis in the fast lane
Streamlined workflows for DNA and RNA sequencing are helping clinicians to deliver prompt, targeted care to people in days — or even hours.
- Michael Eisenstein
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Article
| Open AccessGenomic data in the All of Us Research Program
A study describes the release of clinical-grade whole-genome sequence data for 245,388 diverse participants by the All of Us Research Program and characterizes the properties of the dataset.
- Alexander G. Bick
- , Ginger A. Metcalf
- & Joshua C. Denny
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News |
Ambitious survey of human diversity yields millions of undiscovered genetic variants
Analysis of the ‘All of Us’ genomic data set begins to tackle inequities in genetics research.
- Max Kozlov
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Article
| Open AccessGenetic drivers of heterogeneity in type 2 diabetes pathophysiology
A meta-analysis of genome-wide association studies of type 2 diabetes (T2D) identifies more than 600 T2D-associated loci; integrating physiological trait and single-cell chromatin accessibility data at these loci sheds light on heterogeneity within the T2D phenotype.
- Ken Suzuki
- , Konstantinos Hatzikotoulas
- & Eleftheria Zeggini
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News |
Move over, CRISPR: RNA-editing therapies pick up steam
Two RNA-editing therapies for genetic diseases have in the past few months gained approval for clinical trials, raising hopes for safer treatments.
- Mariana Lenharo
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Article |
Deep whole-genome analysis of 494 hepatocellular carcinomas
The Chinese Liver Cancer Atlas project depicts a panoramic genomic landscape of hepatocellular carcinoma, covering candidate coding and non-coding drivers, mutational signatures, extrachromosomal circular DNA, subclonal catastrophic events and detailed evolutionary history.
- Lei Chen
- , Chong Zhang
- & Hongyang Wang
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Article
| Open AccessGenetic determinants of micronucleus formation in vivo
Genetic screening identifies a rich catalogue of regulators of micronucleus formation.
- D. J. Adams
- , B. Barlas
- & G. Balmus
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Article
| Open AccessA single-cell time-lapse of mouse prenatal development from gastrula to birth
Single-cell transcriptome profiling of mouse embryos and newborn pups is combined with previously published data to construct a tree of cell-type relationships tracing development from zygote to birth.
- Chengxiang Qiu
- , Beth K. Martin
- & Jay Shendure
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News |
Glow way! Bioluminescent houseplant hits US market for first time
Engineered petunia emits a continuous green glow thanks to genes from a light-up mushroom.
- Katherine Bourzac
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Article |
Convergence of coronary artery disease genes onto endothelial cell programs
Variant-to-gene-to-program is a new approach to building maps of genome function to link risk variants to disease genes and to convergent signalling pathways in an unbiased manner; its strength is demonstrated in coronary artery disease.
- Gavin R. Schnitzler
- , Helen Kang
- & Jesse M. Engreitz
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Article
| Open AccessTranslation selectively destroys non-functional transcription complexes
Translation actively dislodges stalled transcription elongation complexes (ECs) from damaged DNA, which enables lesion repair and restoration of transcription activity, and coupled ribosomes discriminate between active ECs and stalled ECs, ensuring destruction of only the latter.
- Jason Woodgate
- , Hamed Mosaei
- & Nikolay Zenkin
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Book Review |
It’s time to admit that genes are not the blueprint for life
The view of biology often presented to the public is oversimplified and out of date. Scientists must set the record straight, argues a new book.
- Denis Noble
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News |
Why autoimmune disease is more common in women: X chromosome holds clues
Rogue antibodies are drawn to the protein–RNA coating on half of the X chromosomes in an XX cell.
- Elie Dolgin
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Nature Video |
Why human brain cells grow so slowly
Some human neurons take years to reach maturity; an epigenetic ‘brake’ could be responsible.
- Shamini Bundell
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News & Views |
An early look at birth cohort genetics in China
Genetic sequencing data from more than 4,000 Chinese participants in the Born in Guangzhou Cohort Study provide insights into the population, and a snapshot of what is to come in future phases of the project.
- Nicholas John Timpson
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Article |
The Born in Guangzhou Cohort Study enables generational genetic discoveries
Analysis of data from the Born in Guangzhou Cohort Study comprising mainly of trios and mother–infant pairs reveals novel East Asian-specific genetic associations with maternal bile acid, gestational weight gain and infant cord blood traits.
- Shujia Huang
- , Siyang Liu
- & Xiu Qiu
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News |
New genetic variants found in large Chinese mother–baby study
The study is one of the first in Asia to examine links between the genomes of mothers, babies and their health.
- Smriti Mallapaty
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Nature Podcast |
Ancient DNA solves the mystery of who made a set of stone tools
Analysis of stone tools and DNA reveals when modern humans reached northern Europe, and why human brain cells grow so slowly.
- Nick Petrić Howe
- & Shamini Bundell
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News & Views |
From the archive: Mendelian inheritance, and an enigmatic echo
Snippets from Nature’s past.
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News & Views Forum |
The journey to understand previously unknown microbial genes
The analysis of DNA sequences sheds light on microbial biology, but it is difficult to assess the function of genes that have little or no similarity to characterized genes. Here, scientists discuss this challenge from genomic and microbial perspectives.
- Jakob Wirbel
- , Ami S. Bhatt
- & Alexander J. Probst
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News |
‘Wildly weird’ RNA bits discovered infesting the microbes in our guts
Rod-shaped structures named ‘obelisks’ are even smaller than viruses but can still transmit instructions to cells.
- Saima Sidik
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News |
Syphilis microbe’s family has plagued humans for millennia
Ancient DNA recovered from Brazilian remains shows that treponemal diseases originated some 10,000 years earlier than previously thought.
- Ewen Callaway
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Article
| Open AccessRedefining the treponemal history through pre-Columbian genomes from Brazil
Reconstruction of four Treponema pallidum genomes associated with human remains from around 2,000 years ago suggests that T. pallidum existed in the Americas and diverged to its modern subspecies before the fifteenth century European contact with the Americas.
- Kerttu Majander
- , Marta Pla-Díaz
- & Verena J. Schuenemann
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