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DNA-based programmable gate arrays for general-purpose DNA computing
Generic single-stranded oligonucleotides used as a uniform transmission signal can reliably integrate large-scale DNA integrated circuits with minimal leakage and high fidelity for general-purpose computing.
- Hui Lv
- , Nuli Xie
- & Chunhai Fan
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Article |
Harnessing a paper-folding mechanism for reconfigurable DNA origami
A method is presented to harness the paper-folding mechanism of reconfigurable macroscale systems to create reconfigurable DNA origami structures, in anticipation that it will advance the development of complex molecular systems.
- Myoungseok Kim
- , Chanseok Lee
- & Do-Nyun Kim
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Article
| Open AccessÅngström-resolution fluorescence microscopy
The authors introduce a single-molecule DNA-barcoding method, resolution enhancement by sequential imaging, that improves the resolution of fluorescence microscopy down to the Ångström scale using off-the-shelf fluorescence microscopy hardware and reagents.
- Susanne C. M. Reinhardt
- , Luciano A. Masullo
- & Ralf Jungmann
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Article |
Nonlinear decision-making with enzymatic neural networks
Mimicking traditional digital neural networks with DNA-encoded ‘enzymatic’ neurons overcomes issues with other chemical approaches, and could allow notable increases in miniaturization and molecular implementation of these AI models, with potential applications including DNA data storage or cancer diagnosis.
- S. Okumura
- , G. Gines
- & A. J. Genot
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Article |
Shape memory in self-adapting colloidal crystals
Preparing crystals held together with macromolecular bonds can create shape memory materials that can be engineered to exhibit a wide range of reversible changes useful for chemical sensing, optics and robotics.
- Seungkyu Lee
- , Heather A. Calcaterra
- & Chad A. Mirkin
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Article
| Open AccessA DNA origami rotary ratchet motor
A nanoscale rotary motor made of DNA origami, driven by ratcheting and powered by an external electric field, shows the ability to wind up a spring and has mechanical capabilities approaching those of biological motors.
- Anna-Katharina Pumm
- , Wouter Engelen
- & Hendrik Dietz
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Letter |
Diverse and robust molecular algorithms using reprogrammable DNA self-assembly
A set of 355 self-assembling DNA ‘tiles’ can be reprogrammed to implement many different computer algorithms—including sorting, palindrome testing and divisibility by three—suggesting that molecular self-assembly could be a reliable algorithmic component in programmable chemical systems.
- Damien Woods
- , David Doty
- & Erik Winfree
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Letter |
Complex silica composite nanomaterials templated with DNA origami
DNA origami is used as a template to produce complex geometric shapes of nanoscale silica hybrid materials.
- Xiaoguo Liu
- , Fei Zhang
- & Chunhai Fan
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Letter |
Scaling up molecular pattern recognition with DNA-based winner-take-all neural networks
DNA-strand-displacement reactions are used to implement a neural network that can distinguish complex and noisy molecular patterns from a set of nine possibilities—an improvement on previous demonstrations that distinguished only four simple patterns.
- Kevin M. Cherry
- & Lulu Qian
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Letter |
Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns
Simple assembly rules applied recursively in a multistage assembly process enable the creation of DNA origami arrays with sizes of up to 0.5 square micrometres and with arbitrary patterns.
- Grigory Tikhomirov
- , Philip Petersen
- & Lulu Qian
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Letter |
Gigadalton-scale shape-programmable DNA assemblies
By using DNA sequence information to encode the shapes of DNA origami building blocks, shape-programmable assemblies can be created, with sizes and complexities similar to those of viruses.
- Klaus F. Wagenbauer
- , Christian Sigl
- & Hendrik Dietz
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Letter |
Biotechnological mass production of DNA origami
All necessary strands for DNA origami can be created in a single scalable process by using bacteriophages to generate single-stranded precursor DNA containing the target sequences interleaved with self-excising DNA enzymes.
- Florian Praetorius
- , Benjamin Kick
- & Hendrik Dietz
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Letter |
Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components
DNA bricks with binding domains of 13 nucleotides instead of the typical 8 make it possible to self-assemble gigadalton-scale, three-dimensional nanostructures consisting of tens of thousands of unique components.
- Luvena L. Ong
- , Nikita Hanikel
- & Peng Yin
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Letter |
Engineering and mapping nanocavity emission via precision placement of DNA origami
The incorporation of large numbers of chemically diverse functional components into microfabricated structures at precise locations is challenging; now the precision placement of DNA origami by directed self-assembly is shown to overcome this problem for the purpose of reliably and controllably coupling molecular emitters to photonic crystal cavities.
- Ashwin Gopinath
- , Evan Miyazono
- & Paul W. K. Rothemund
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Letter |
Guiding the folding pathway of DNA origami
Probing the assembly process that occurs when single-stranded DNA is folded into desired shapes by ‘DNA origami’ shows that it can be guided by controlling the strengths of local and long-range interactions, enabling more reproducible synthesis.
- Katherine E. Dunn
- , Frits Dannenberg
- & Jonathan Bath
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Letter |
DNA rendering of polyhedral meshes at the nanoscale
A general method of folding arbitrary polygonal digital meshes in DNA uses a routeing algorithm based on graph theory and a relaxation simulation that traces scaffold strands through the target structures to produce complex structures with an open conformation that are stable under biological assay conditions.
- Erik Benson
- , Abdulmelik Mohammed
- & Björn Högberg
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Letter |
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA
An efficient and scalable strategy with robust error correction is reported for encoding a record amount of information (including images, text and audio files) in DNA strands; a ‘DNA archive’ has been synthesized, shipped from the USA to Germany, sequenced and the information read.
- Nick Goldman
- , Paul Bertone
- & Ewan Birney
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News |
Fast DNA origami opens way for nanoscale machines
Molecules can now be folded into shapes in minutes, not days.
- Katharine Sanderson
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News |
A fresh chapter for organic data storage
A book complete with illustrations has been encoded in DNA.
- Monya Baker
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News & Views |
The importance of being modular
DNA is the material of choice for making custom-designed, nanoscale shapes and patterns through self-assembly. A new technique revisits old ideas to enable the rapid prototyping of more than 100 such DNA shapes. See Letter p.623
- Paul W. K. Rothemund
- & Ebbe Sloth Andersen
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Letter |
DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response
Using DNA origami enables the high-yield production of chiral structures containing nanoparticles arranged in helices, with a tunable optical response.
- Anton Kuzyk
- , Robert Schreiber
- & Tim Liedl
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News |
DNA robot could kill cancer cells
Device identifies target then releases deadly payload.
- Alla Katsnelson
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News & Views |
Shape matters
The ligand-mediated binding of colloid particles to each other is more effective if the particles are flat rather than curved. This finding opens up opportunities for the design of self-assembling materials.
- Sharon C. Glotzer
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News |
Acrimony over nanoconstruction
Researchers clash over RNA's ability to produce crystalline nanoparticles.
- Eugenie Samuel Reich
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Research Highlights |
Wired up by DNA strands
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Research Highlights |
Nanotechnology: DNA tiles yield bigger arrays
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News & Views |
Molecular robots on the move
Robots have to store lots of information in order to coordinate their actions, but how can this be done for nanometre-scale robots? One answer is to program data into the robots' environment instead.
- Lloyd M. Smith
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News Feature |
Bioengineering: What to make with DNA origami
Chemists looking to create complex self-assembling nanostructures are turning to DNA. Katharine Sanderson looks at the science beneath the fold.
- Katharine Sanderson