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| Open AccessDormant pathogenic CD4+ T cells are prevalent in the peripheral repertoire of healthy mice
Autoreactive T cells are normally eliminated during their maturation in the thymus, but an unknown number of autoreactive CD4+ T cells escape to the periphery. Here the authors show, by comparing the T cell receptors of mice sufficient or deficient in CD4+Foxp3+ regulatory T (Treg) cells, that autoreactive and potentially pathogenic clones account for approximately one-third of the peripheral repertoire of CD4+Foxp3– cells.
- Anna Cebula
- , Michal Kuczma
- & Leszek Ignatowicz
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Article
| Open AccessSingle-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
“Genome-wide association studies have identified variants associated with age-related macular degeneration (AMD); however, other than identifying this as a complement mediated inflammatory disease, little biology has emerged. Here, authors used novel computational tools from the Broad Institute to examine the relationship of single-cell transcriptomics and genome-wide association studies (GWAS) in the human retina and demonstrate that GWAS-associated risk alleles associated with AMD are enriched in glia and vascular cells and that human retinal glia are more diverse than previously thought
- Madhvi Menon
- , Shahin Mohammadi
- & Brian P. Hafler
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Article
| Open AccessDietary tryptophan links encephalogenicity of autoreactive T cells with gut microbial ecology
Food intake shapes intestinal microbiome composition, which in turn shapes adaptive immune responses. Here the authors show that dietary tryptophan restriction (DTR) protects mice from subsequent autoimmune neuropathology challenge by altering intestinal microbiota, highlighting the potential of diet-regulated microbiota to prevent immune pathology.
- Jana K. Sonner
- , Melanie Keil
- & Michael Platten
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Article
| Open AccessTankyrase inhibition preserves osteoarthritic cartilage by coordinating cartilage matrix anabolism via effects on SOX9 PARylation
Osteoarthritis results from the progressive destruction of cartilage matrix. Here, Kim et al. identify tankyrase as a regulator of cartilage matrix anabolism, and find that tankyrase inhibition, by preventing SOX9 PARylation, protects from cartilage destruction in a mouse model of osteoarthritis.
- Sukyeong Kim
- , Sangbin Han
- & Jin-Hong Kim
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Article
| Open AccessDissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei
Shigella sonnei is one of the main species causing shigellosis worldwide. Here the authors analyse nearly 400 S. sonnei genome sequences and carry out experimental evolution experiments to shed light into the evolutionary processes underlying the recent emergence of fluoroquinolone resistance in this pathogen.
- Hao Chung The
- , Christine Boinett
- & Stephen Baker
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Article
| Open AccessA human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation
Roquin-1 is a posttranscriptional regulator that controls the expression of many immune-related genes such as ICOS and TNFA. Here, the authors report a homozygous R688* loss of function mutation in Roquin-1 in a patient with syndromic uncontrolled hyperinflammation associated with immune cell activation and hypercytokinemia.
- S. J. Tavernier
- , V. Athanasopoulos
- & F. Haerynck
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Article
| Open AccessResident memory T cells are a cellular reservoir for HIV in the cervical mucosa
Using cervical explant models and cervical tissue from ART-suppressed HIV+ women, the authors here show that resident memory T cells (TRM) in the cervical mucosa are preferentially infected and harbor more viral DNA, RNA and protein than non-TRM, suggesting that TRM may serve as viral reservoir in the cervical mucosa.
- Jon Cantero-Pérez
- , Judith Grau-Expósito
- & Meritxell Genescà
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Article
| Open AccessUHRF1 suppresses retrotransposons and cooperates with PRMT5 and PIWI proteins in male germ cells
Retrotransposons are silenced by an epigenetic mechanism and piRNA pathway in the mammalian germline. Here, the authors report that UHRF1 suppresses retrotransposons by interacting with PRMT5 and PIWI proteins during spermatogenesis.
- Juan Dong
- , Xiaoli Wang
- & Shuiqiao Yuan
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Article
| Open AccessDe novo and recessive forms of congenital heart disease have distinct genetic and phenotypic landscapes
Large whole-exome sequencing studies have suggested that the genetic architecture of syndromic congenital heart disease (CHD) is different from sporadic forms. Here, Watkins et al. estimate the relative contribution of damaging recessive and de novo genotypes to CHD in 2391 trios and find them to be associated with different gene functions.
- W. Scott Watkins
- , E. Javier Hernandez
- & Martin Tristani-Firouzi
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Article
| Open AccessColonizing multidrug-resistant bacteria and the longitudinal evolution of the intestinal microbiome after liver transplantation
In a large prospective cohort of liver transplantation (LT) recipients, the authors identify associations between colonization by multidrug-resistant bacteria (MDRB) and microbiome dysbiosis pre- and post-LT, suggesting colonizing MDRB as an important target for microbiome-informed therapeutic approaches post-LT.
- Medini K. Annavajhala
- , Angela Gomez-Simmonds
- & Anne-Catrin Uhlemann
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Article
| Open AccessImpacts of environmental and socio-economic factors on emergence and epidemic potential of Ebola in Africa
The capacity to predict zoonotic disease outbreaks is hampered by data availability and complex relationships between humans, wildlife, and the environment. Here the authors present a modelling framework that identifies potential high-risk locations for Ebola outbreaks under various climatic, demographic, and land use scenarios.
- David W. Redding
- , Peter M. Atkinson
- & Kate E. Jones
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Article
| Open AccessA Chlamydia pneumoniae adhesin induces phosphatidylserine exposure on host cells
The Chlamydia pneumoniae adhesin LIPP plays a role in host cell entry and infection. Here, the authors find that LIPP binds to the host plasma membrane and mediates phosphatidylserine translocation, enhancing pathogen internalization without induction of apoptosis.
- Jan N. Galle
- , Tim Fechtner
- & Johannes H. Hegemann
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Article
| Open AccessCis-regulatory CYP6P9b P450 variants associated with loss of insecticide-treated bed net efficacy against Anopheles funestus
Bed nets treated with insecticides have been instrumental in reducing malaria mortality, but insecticide resistance is on the rise. Here, Mugenzi et al. identify genetic variants in the P450 gene CYP6P9b of Anopheles funestus that associate with insecticide resistance and develop a PCR-based diagnostic assay to help identify pyrethroid-resistant strains.
- Leon M. J. Mugenzi
- , Benjamin D. Menze
- & Charles S. Wondji
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Article
| Open AccessRare mutations in the complement regulatory gene CSMD1 are associated with male and female infertility
Many molecular and physiological mechanisms in the regulation of fertility are shared between female and male mammals. Here, Lee et al. report an association of CNVs in CSMD1 with early idiopathic menopause in women and show that loss of Csmd1 leads to gonadal dysfunction in both male and female mice.
- Arthur S. Lee
- , Jannette Rusch
- & Donald F. Conrad
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Article
| Open AccessOligomeric state of the ZIKV E protein defines protective immune responses
Many human antibodies that neutralize Zika virus recognize quaternary epitopes on the envelope (E) protein. Here, Metz et al. engineer stable recombinant homodimers of Zika virus E protein and show that it induces neutralizing antibodies in mice that recognize similar epitopes as human antibodies from Zika infected people.
- Stefan W. Metz
- , Ashlie Thomas
- & Aravinda M. de Silva
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Article
| Open AccessEngineering transferrable microvascular meshes for subcutaneous islet transplantation
The success of engineered tissue depends on the integration of a dense vascular network to supply nutrients and remove waste products. Here the authors design high density microvascular meshes made through an anchored self-assembly mechanism, and use these meshes to support subcutaneous pancreatic islet survival in a mouse diabetes model.
- Wei Song
- , Alan Chiu
- & Minglin Ma
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Article
| Open AccessViral N6-methyladenosine upregulates replication and pathogenesis of human respiratory syncytial virus
Here, Xue et al. identify N6-methyladenosine (m6A) modification sites in RNAs of respiratory syncytial virus (RSV) and show that these sites, particularly sites in the transcript encoding for the viral glycoprotein, affect virus replication in primary human cells and cotton rats.
- Miaoge Xue
- , Boxuan Simen Zhao
- & Jianrong Li
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Article
| Open AccessFungal dissemination is limited by liver macrophage filtration of the blood
Patients with liver diseases are at increased risk of fungal infections. Here the authors show that Kupffer cells are critical for the filtration of fungi out of the blood and thereby for liver-mediated protection against disseminating fungal infection.
- Donglei Sun
- , Peng Sun
- & Meiqing Shi
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Article
| Open AccessHIF1α inhibition facilitates Leflunomide-AHR-CRP signaling to attenuate bone erosion in CRP-aberrant rheumatoid arthritis
Leflunomide is used for the treatment of rheumatoid arthritis. Here, the authors show that effectiveness is limited in patients with higher levels of serum c-reactive protein (CRP). Using animal models, they show that higher CRP induces HIF1a expression, which in turn interferes with Leflunomide signalling, and that effectiveness of the drug is restored when HIF1a is pharmacologically inhibited.
- Chao Liang
- , Jie Li
- & Aiping Lu
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Article
| Open AccessInternational meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci
Post-traumatic stress disorder (PTSD) is a common mental health problem. Here, the authors report a GWAS from the Psychiatric Genomics Consortium in which they identify two risk loci in European ancestry and one locus in African ancestry individuals and find that PTSD is genetically correlated with several other psychiatric traits.
- Caroline M. Nievergelt
- , Adam X. Maihofer
- & Karestan C. Koenen
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Article
| Open AccessAdaptation of Plasmodium falciparum to humans involved the loss of an ape-specific erythrocyte invasion ligand
Here, Proto et al. show that human infective Plasmodium falciparum isolates contain an inactivating mutation in the erythrocyte invasion associated gene PfEBA165, while homologues of ape-infective Laverania species are intact, and that expression of intact PfEBA165 is incompatible with parasite growth in human erythrocytes.
- William R. Proto
- , Sasha V. Siegel
- & Julian C. Rayner
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Article
| Open AccessIn vivo non-invasive monitoring of dystrophin correction in a new Duchenne muscular dystrophy reporter mouse
Dystrophin-deficient mice are used to test corrective strategies for Duchenne muscular dystrophy, but evaluation of dystrophin expression requires collection of tissue samples from specific muscles and time points. Here, the authors generate mice in which dystrophin expression is coupled to luciferase, and show that bioluminescence allows non-invasive monitoring of dystrophin expression following genome editing.
- Leonela Amoasii
- , Hui Li
- & Eric N. Olson
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Article
| Open AccessInterleukin 22 disrupts pancreatic function in newborn mice expressing IL-23
Necrotizing enterocolitis (NEC) is associated with severe neonatal morbidity. Here the authors show, mirroring the NEC phenotype, that IL-23 overexpression in neonates causes malabsorption and decreased expression of intestinal and pancreatic genes mediating food digestion and uptake through IL-22, which directly suppresses pancreatic cell differentiation.
- Lili Chen
- , Valentina Strohmeier
- & Glaucia C. Furtado
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Article
| Open AccessSingle cell transcriptome in aneuploidies reveals mechanisms of gene dosage imbalance
Gene dosage anomalies such as those caused by aneuploidy underlie diseases including Down syndrome. Here, the authors perform allele-specific single cell transcriptome analysis to investigate the mechanisms of gene dosage imbalance in fibroblasts with trisomies T21, T18, T13 and T8.
- Georgios Stamoulis
- , Marco Garieri
- & Stylianos E. Antonarakis
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Article
| Open AccessZinc-doped Prussian blue enhances photothermal clearance of Staphylococcus aureus and promotes tissue repair in infected wounds
Here, the authors apply transition metal doping in combination with phototermal therapy to treat Staphylococcus aureus-infected wounds, and show that release of ions by local heat enhances bacteria clearance and promotes tissue repair in a rat model of MRSA-infected wounds
- Jun Li
- , Xiangmei Liu
- & Shuilin Wu
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Article
| Open AccessReduced mu opioid receptor availability in schizophrenia revealed with [11C]-carfentanil positron emission tomographic Imaging
Post-mortem studies have suggested a possible reduction in mu-opioid receptor (MOR) density in people with schizophrenia. Here, the authors examined MOR in living patients with schizophrenia using PET imaging, and found local reductions of MOR compared to controls.
- Abhishekh H. Ashok
- , Jim Myers
- & Oliver D. Howes
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Article
| Open AccessGingival solitary chemosensory cells are immune sentinels for periodontitis
Solitary chemosensory cells (SCCs) expressing taste receptors reside in mucosal epithelia including the gingiva. Here the authors show that ablation of taste-sensing by SSCs leads to outgrowth of pathogenic oral bacteria and periodontitis, whereas bitter taste receptor stimulation promotes antimicrobial peptide production and ameliorates periodontitis.
- Xin Zheng
- , Marco Tizzano
- & Robert F. Margolskee
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Article
| Open AccessDevelopment of a forward-oriented therapeutic lentiviral vector for hemoglobin disorders
Vectors used in gene therapy for hemoglobin disorders carry globin in a reverse-orientation to prevent the loss of key regulatory elements by RNA splicing, but this limits their efficiency. Here, the authors develop a vector carrying β-globin in a forward orientation and show that it has improved titers and transduction efficiency in humanized mice and nonhuman primates.
- Naoya Uchida
- , Matthew M. Hsieh
- & John F. Tisdale
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Article
| Open AccessTranscriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes
A recent GWAS reported 12 genetic loci for attention deficit/hyperactivity disorder (ADHD). Here, Liao et al. perform transcriptomic imputation using these data and 12 brain-relevant tissues from GTEx and CMC to identify 9 genes associated with ADHD by TWAS, 3 of which had not yet been reported for ADHD.
- Calwing Liao
- , Alexandre D. Laporte
- & Guy A. Rouleau
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Article
| Open AccessABCC9-related Intellectual disability Myopathy Syndrome is a KATP channelopathy with loss-of-function mutations in ABCC9
ABCC9 encodes the SUR2 subunit of KATP channels and dominant genetic variants in ABCC9 have been associated with cardiac phenotypes. Here, the authors report recessive ABCC9 mutations in individuals with mild intellectual disability, myopathy and cardiac systolic dysfunction which is associated with loss of KATP channel function.
- Marie F. Smeland
- , Conor McClenaghan
- & Gijs van Haaften
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Article
| Open AccessAbl family tyrosine kinases govern IgG extravasation in the skin in a murine pemphigus model
How antibody reaches tissues from circulation is critical for understanding antibody-mediated immunity. Here the authors show that IgG extravasation in the skin is mediated by endothelial caveolin transport independently of FcR, and is targetable by imatinib, which reduces IgG-dependent pathology in a mouse model of pemphigus.
- Sachiko Ono
- , Gyohei Egawa
- & Kenji Kabashima
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Article
| Open AccessFirst-in-human trial of blood–brain barrier opening in amyotrophic lateral sclerosis using MR-guided focused ultrasound
MR-focused ultrasound can be used to transiently open the blood-brain barrier (BBB). Here, the authors report the results of a first-in-human trial on four patients with amyotrophic lateral sclerosis (ALS), showing that the procedure reversibly permeabilised the BBB in the motor cortex without complications, and suggest that the procedure could in the future be used to increase drug delivery in ALS patients.
- Agessandro Abrahao
- , Ying Meng
- & Lorne Zinman
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Article
| Open AccessThermo-responsive triple-function nanotransporter for efficient chemo-photothermal therapy of multidrug-resistant bacterial infection
Antibiotic resistance is a major global health challenge. Here, the authors report on a thermoresponsive delivery system for combined photothermal and antibiotic delivery with fluorescent tracking abilities and demonstrate application against antibiotic resistant bacteria in vitro and in vivo.
- Guangchao Qing
- , Xianxian Zhao
- & Xing-Jie Liang
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Article
| Open AccessPotent antibody lineage against malaria transmission elicited by human vaccination with Pfs25
Pfs25 is a transmission-blocking vaccine candidate for Plasmodium. Here, McLeod et al. analyze the antibody response to Pfs25 in sera from a clinical trial evaluating a Pfs25 vaccine candidate, identify a potent transmission-blocking antibody and determine recognized epitopes on Pfs25.
- Brandon McLeod
- , Kazutoyo Miura
- & Jean-Philippe Julien
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Article
| Open AccessHuman induced pluripotent stem cell-derived vocal fold mucosa mimics development and responses to smoke exposure
There is a lack of human models to study vocal fold epithelia making it difficult to provide therapies for vocal fold disease. Here, the authors generate a human-based model of vocal fold mucosa that mimics in utero development and shows inflammation on exposure to cigarette smoke abstract.
- Vlasta Lungova
- , Xia Chen
- & Susan L. Thibeault
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Article
| Open AccessInactivation of NF-κB2 (p52) restrains hepatic glucagon response via preserving PDE4B induction
Elevated glucagon level in obesity and diabetes promotes hepatic glucose production and hyperglycemia. Here the authors report that NF-κB2 augments the hepatic glucagon responses by inhibiting PDE4B induction, and that metformin lowers blood glucose in part by inhibiting NF-κB2.
- Wen-Song Zhang
- , An Pan
- & Ping Li
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Article
| Open AccessVAMP8-mediated MUC2 mucin exocytosis from colonic goblet cells maintains innate intestinal homeostasis
VAMP8 is a secretory pathway protein implicated in mucus secretion. Here the authors describe alterations in intestinal immune state and microbiota composition, as well as increased susceptibility to experimental colitis in mice deficient for VAMP8.
- Steve Cornick
- , Manish Kumar
- & Kris Chadee
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Article
| Open AccessAgricultural land-uses consistently exacerbate infectious disease risks in Southeast Asia
Here, Shah et al. perform a meta-analysis and show that people who live or work in agricultural land in Southeast Asia are on average 1.7 times more likely to be infected with a pathogen than controls, suggesting that agricultural land-use increases infectious disease risk.
- Hiral A. Shah
- , Paul Huxley
- & Kris A. Murray
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Article
| Open AccessPlasmodium vivax chloroquine resistance links to pvcrt transcription in a genetic cross
Here, a cross of Plasmodium vivax malaria parasites links a chloroquine resistance (CQR) phenotype to a 76 kb region of chromosome 1 and greater expression of pvcrt, an ortholog of the Plasmodium falciparum CQR transporter gene.
- Juliana M. Sá
- , Sarah R. Kaslow
- & Thomas E. Wellems
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Article
| Open AccessAn African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation
Invasive non-typhoidal Salmonella (iNTS) infections are dominated by antibiotic resistant isolates of the sequence type (ST) 313. Here, the authors identify the ST313 sublineage II.1 in the Democratic Republic of the Congo exhibiting extensive drug resistance and genetic signatures potentially associated with host adaptation.
- Sandra Van Puyvelde
- , Derek Pickard
- & Stijn Deborggraeve
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Article
| Open AccessMaladaptive activation of Nav1.9 channels by nitric oxide causes triptan-induced medication overuse headache
The precise mechanisms that lead to medication-overuse headaches (MOH), which can occur with both over-the-counter and prescription pain-relief medicines, are still uncertain. In this study, authors show that the abnormal activation of dural nociceptor Nav1.9 channels by Nitric Oxide is responsible for triptan-induced MOH, causing hyperexcitability of dural nociceptors and headache.
- Caroline Bonnet
- , Jizhe Hao
- & Patrick Delmas
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Article
| Open AccessDouble negative T cells mediate Lag3-dependent antigen-specific protection in allergic asthma
Allergic asthma symptoms may be controlled, but currently no effective therapy exist to address the underlying pathology. Here the authors show, using mouse model of adoptive cell transfer, that CD4-CD8- T cells can suppress the function of dendritic cells and T follicular helper cells via Lag3 to provide allergen-specific protection from asthma.
- Dan Tian
- , Lu Yang
- & Dong Zhang
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Article
| Open AccessDerailing the aspartate pathway of Mycobacterium tuberculosis to eradicate persistent infection
Amino acid biosynthetic pathways are an attractive alternative to treat chronic infections such as Mycobacterium tuberculosis (Mtb). Here, the authors investigate the metabolic response to disruption of the aspartate pathway in persistent Mtb and identify essential enzymes as potential new targets for drug development.
- Erik J. Hasenoehrl
- , Dannah Rae Sajorda
- & Michael Berney
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Article
| Open AccessGastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases
Gastroesophageal reflux disease (GERD) is a major risk factor for Barret’s esophagus (BE) and esophageal adenocarcinoma (EA). Here, An et al. report 25 genetic loci for GERD, many of which associate with BE and EA or with other traits such as BMI.
- Jiyuan An
- , Puya Gharahkhani
- & Stuart MacGregor
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Article
| Open AccessLongitudinal EEG power in the first postnatal year differentiates autism outcomes
Brain oscillations may be disrupted in children with autism spectrum disorder. The authors performed a longitudinal study of electroencephalography recordings and found that EEG recordings from the first year after birth can distinguish healthy children from children with autism spectrum disorder.
- Laurel J. Gabard-Durnam
- , Carol Wilkinson
- & Charles A. Nelson
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Article
| Open AccessDepletion of HuR in murine skeletal muscle enhances exercise endurance and prevents cancer-induced muscle atrophy
HuR is an RNA-binding protein that regulates myotube differentiation in vitro. Here, the authors show that the muscle-specific ablation of HuR in mice leads to enhanced endurance capacity and an increase in oxidative fibres by destabilising PGC1α-mRNA, and show that the mice are protected against cancer cachexia
- Brenda Janice Sánchez
- , Anne-Marie K. Tremblay
- & Imed-Eddine Gallouzi
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Article
| Open AccessB cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma
The regulation of tumor inflammation is incompletely understood and the role of B cells is unclear. Here, the authors show that a specific subtype of B cells is induced in melanoma and required to recruit T lymphocytes and elicit inflammation.
- Johannes Griss
- , Wolfgang Bauer
- & Stephan N. Wagner
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Article
| Open AccessCircadian control of lung inflammation in influenza infection
The circadian clock affects immune responses, but its role in influenza infection is not well understood. Here, Sengupta et al. show that time of infection and the circadian clock have no effect on lung virus titers, but affect inflammation, morbidity and mortality.
- Shaon Sengupta
- , Soon Y. Tang
- & Garret A. FitzGerald
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Article
| Open AccessPathogen-targeting glycovesicles as a therapy for salmonellosis
Antibiotic therapy is usually not effective for salmonellosis. Here, the authors present an approach that may be useful for the treatment of salmonellosis, consisting of hydrogen sulfide (H2S)-responsive glycovesicles that release antibiotics in the presence of Salmonella in the gut.
- Haibo Mu
- , Hu Bai
- & Jinyou Duan
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