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Research | 4 January 2021 | Open
Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria
- NPG Nature Publishing Group UK London Nature Research 41467
- Koji Yahara
- , Masato Suzuki
- , Aki Hirabayashi
- , Wataru Suda
- , Masahira Hattori
- , Yutaka Suzuki
- & Yusuke Okazaki
Nature Communications 12 , 1–12

Rights & permissionsfor article Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria . Opens in a new window.
Research | 27 July 2020 | Open
High diversity and variability of pipolins among a wide range of pathogenic Escherichia coli strains
- NPG Nature Publishing Group UK London Nature Research 41598
Scientific Reports 10 , 1–15

Rights & permissionsfor article High diversity and variability of pipolins among a wide range of pathogenic <i>Escherichia coli</i> strains . Opens in a new window.
Research | 20 July 2020 | Open
Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
- Mart Krupovic
- Yuri I. Wolf
- , Sukrit Silas
- , Yongjie Wang
- , Shuang Wu
- , Michael Bocek
- , Darius Kazlauskas
- , Mart Krupovic
- , Andrew Fire
- , Valerian V. Dolja
- & Eugene V. Koonin
Nature Microbiology 5 , 1262–1270

Rights & permissionsfor article Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome . Opens in a new window.
Reviews | 14 July 2020
The LUCA and its complex virome
- mart.krupovic@pasteur.fr
Nature Reviews Microbiology 18 , 661–670

Rights & permissionsfor article The LUCA and its complex virome . Opens in a new window.
Research | 9 July 2020 | Open
The structures of two archaeal type IV pili illuminate evolutionary relationships
- mart.krupovic@pasteur.fr
Nature Communications 11 , 1–10

Rights & permissionsfor article The structures of two archaeal type IV pili illuminate evolutionary relationships . Opens in a new window.
Research | 22 April 2020
New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities
- mart.krupovic@pasteur.fr
The ISME Journal 14 , 1821–1833

Rights & permissionsfor article New virus isolates from Italian hydrothermal environments underscore the biogeographic pattern in archaeal virus communities . Opens in a new window.
Amendments and Corrections | 11 February 2020 | Open
Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
- Mart Krupovic
- Simon Roux
- , Mart Krupovic
- , Rebecca A. Daly
- , Adair L. Borges
- , Stephen Nayfach
- , Frederik Schulz
- , Allison Sharrar
- , Paula B. Matheus Carnevali
- , Jan-Fang Cheng
- , Natalia N. Ivanova
- , Joseph Bondy-Denomy
- , Kelly C. Wrighton
- , Tanja Woyke
- , Axel Visel
- , Nikos C. Kyrpides
- & Emiley A. Eloe-Fadrosh
Nature Microbiology 5 , 527–527

Rights & permissionsfor article Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes . Opens in a new window.
Research | 22 January 2020 | Open
Giant virus diversity and host interactions through global metagenomics
- NPG Nature Publishing Group UK London Nature Research 41586
Nature 578 , 432–436

Rights & permissionsfor article Giant virus diversity and host interactions through global metagenomics . Opens in a new window.
Research | 15 January 2020
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity
- Mart Krupovic
Nature 577 , 572–575

Rights & permissionsfor article An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity . Opens in a new window.
News & Views | 19 December 2019
Phages build anti-defence barriers
- mart.krupovic@pasteur.fr
- Eugene V. Koonin
- & Mart Krupovic
Nature Microbiology 5 , 8–9

Rights & permissionsfor article Phages build anti-defence barriers . Opens in a new window.
Research | 15 November 2019 | Open
Virus-borne mini-CRISPR arrays are involved in interviral conflicts
- mart.krupovic@pasteur.fr
Nature Communications 10 , 1–10

Rights & permissionsfor article Virus-borne mini-CRISPR arrays are involved in interviral conflicts . Opens in a new window.
Reviews | 14 October 2019
Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire
- Mart Krupovic
Nature Reviews Genetics 21 , 119–131

Rights & permissionsfor article Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire . Opens in a new window.
Research | 31 July 2019 | Open
Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids
- Mart Krupovic
Nature Communications 10 , 1–12

Rights & permissionsfor article Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids . Opens in a new window.
Research | 22 July 2019 | Open
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
- Mart Krupovic
- Simon Roux
- , Mart Krupovic
- , Rebecca A. Daly
- , Adair L. Borges
- , Stephen Nayfach
- , Frederik Schulz
- , Allison Sharrar
- , Paula B. Matheus Carnevali
- , Jan-Fang Cheng
- , Natalia N. Ivanova
- , Joseph Bondy-Denomy
- , Kelly C. Wrighton
- , Tanja Woyke
- , Axel Visel
- , Nikos C. Kyrpides
- & Emiley A. Eloe-Fadrosh
Nature Microbiology 4 , 1895–1906

Rights & permissionsfor article Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes . Opens in a new window.
Reviews | 29 May 2019
Origin of viruses: primordial replicators recruiting capsids from hosts
- mart.krupovic@pasteur.fr
Nature Reviews Microbiology 17 , 449–458

Rights & permissionsfor article Origin of viruses: primordial replicators recruiting capsids from hosts . Opens in a new window.
Research | 20 May 2019
An extensively glycosylated archaeal pilus survives extreme conditions
- Mart Krupovic
Nature Microbiology 4 , 1401–1410

Rights & permissionsfor article An extensively glycosylated archaeal pilus survives extreme conditions . Opens in a new window.
Research | 6 May 2019
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- Mart Krupovic
- Ho Bin Jang
- , Benjamin Bolduc
- , Olivier Zablocki
- , Jens H. Kuhn
- , Simon Roux
- , Evelien M. Adriaenssens
- , J. Rodney Brister
- , Andrew M Kropinski
- , Mart Krupovic
- , Rob Lavigne
- , Dann Turner
- & Matthew B. Sullivan
Nature Biotechnology 37 , 632–639

Rights & permissionsfor article Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks . Opens in a new window.
Comments & Opinion | 20 February 2019
Classify viruses — the gain is worth the pain
- Mart Krupovic is a group leader in...
- Jens H. Kuhn
- , Yuri I. Wolf
- , Mart Krupovic
- , Yong-Zhen Zhang
- , Piet Maes
- , Valerian V. Dolja
- & Eugene V. Koonin
Nature 566 , 318–320

Rights & permissionsfor article Classify viruses — the gain is worth the pain . Opens in a new window.
Research | 14 February 2019 | Open
Numerous cultivated and uncultivated viruses encode ribosomal proteins
- Mart Krupovic
Nature Communications 10 , 1–11

Rights & permissionsfor article Numerous cultivated and uncultivated viruses encode ribosomal proteins . Opens in a new window.
Reviews | 17 December 2018 | Open
Minimum Information about an Uncultivated Virus Genome (MIUViG)
- Mart Krupovic
- Simon Roux
- , Evelien M Adriaenssens
- , Bas E Dutilh
- , Eugene V Koonin
- , Andrew M Kropinski
- , Mart Krupovic
- , Jens H Kuhn
- , Rob Lavigne
- , J Rodney Brister
- , Arvind Varsani
- , Clara Amid
- , Ramy K Aziz
- , Seth R Bordenstein
- , Peer Bork
- , Mya Breitbart
- , Guy R Cochrane
- , Rebecca A Daly
- , Christelle Desnues
- , Melissa B Duhaime
- , Joanne B Emerson
- , François Enault
- , Jed A Fuhrman
- , Pascal Hingamp
- , Philip Hugenholtz
- , Bonnie L Hurwitz
- , Natalia N Ivanova
- , Jessica M Labonté
- , Kyung-Bum Lee
- , Rex R Malmstrom
- , Manuel Martinez-Garcia
- , Ilene Karsch Mizrachi
- , Hiroyuki Ogata
- , David Páez-Espino
- , Marie-Agnès Petit
- , Catherine Putonti
- , Thomas Rattei
- , Alejandro Reyes
- , Francisco Rodriguez-Valera
- , Karyna Rosario
- , Lynn Schriml
- , Frederik Schulz
- , Grieg F Steward
- , Matthew B Sullivan
- , Shinichi Sunagawa
- , Curtis A Suttle
- , Ben Temperton
- , Susannah G Tringe
- , Rebecca Vega Thurber
- , Nicole S Webster
- , Katrine L Whiteson
- , Steven W Wilhelm
- , K Eric Wommack
- , Tanja Woyke
- , Kelly C Wrighton
- , Pelin Yilmaz
- , Takashi Yoshida
- , Mark J Young
- , Natalya Yutin
- , Lisa Zeigler Allen
- , Nikos C Kyrpides
- & Emiley A Eloe-Fadrosh
Nature Biotechnology 37 , 29–37

Rights & permissionsfor article Minimum Information about an Uncultivated Virus Genome (MIUViG) . Opens in a new window.
Research | 22 August 2018 | Open
Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile
- Mart Krupovic
- Ying Liu
- , Tomasz Osinski
- , Fengbin Wang
- , Mart Krupovic
- , Stefan Schouten
- , Peter Kasson
- , David Prangishvili
- & Edward H. Egelman
Nature Communications 9 , 1–10

Rights & permissionsfor article Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile . Opens in a new window.
Research | 13 November 2017
Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- Mart Krupovic
- Natalya Yutin
- , Kira S. Makarova
- , Ayal B. Gussow
- , Mart Krupovic
- , Anca Segall
- , Robert A. Edwards
- & Eugene V. Koonin
Nature Microbiology 3 , 38–46

Rights & permissionsfor article Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut . Opens in a new window.
Reviews | 10 November 2017
The enigmatic archaeal virosphere
- Mart Krupovic is an assistant professor in...
Nature Reviews Microbiology 15 , 724–739

Rights & permissionsfor article The enigmatic archaeal virosphere . Opens in a new window.
Research | 10 November 2017 | Open
Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging
- Mart Krupovic
Nature Communications 8 , 1–6

Rights & permissionsfor article Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging . Opens in a new window.
Reviews | 3 January 2017 | Open
Virus taxonomy in the age of metagenomics
- Mart Krupovic is an assistant professor in...
- Peter Simmonds
- , Mike J. Adams
- , Mária Benkő
- , Mya Breitbart
- , J. Rodney Brister
- , Eric B. Carstens
- , Andrew J. Davison
- , Eric Delwart
- , Alexander E. Gorbalenya
- , Balázs Harrach
- , Roger Hull
- , Andrew M.Q. King
- , Eugene V. Koonin
- , Mart Krupovic
- , Jens H. Kuhn
- , Elliot J. Lefkowitz
- , Max L. Nibert
- , Richard Orton
- , Marilyn J. Roossinck
- , Sead Sabanadzovic
- , Matthew B. Sullivan
- , Curtis A. Suttle
- , Robert B. Tesh
- , René A. van der Vlugt
- , Arvind Varsani
- & F. Murilo Zerbini
Nature Reviews Microbiology 15 , 161–168

Rights & permissionsfor article Virus taxonomy in the age of metagenomics . Opens in a new window.
News & Views | 7 December 2016
A parasite's parasite saves host's neighbours
- Mart Krupovic is in the Department of...
- Eugene V. Koonin
- & Mart Krupovic
Nature 540 , 204–205

Rights & permissionsfor article A parasite's parasite saves host's neighbours . Opens in a new window.
Reviews | 22 December 2014
Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution
- Mart Krupovic is a research scientist in...
- Mart Krupovic
- & Eugene V. Koonin
Nature Reviews Microbiology 13 , 105–115

Rights & permissionsfor article Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution . Opens in a new window.
Reviews | 9 December 2014
Evolution of adaptive immunity from transposable elements combined with innate immune systems
- Mart Krupovic is a research scientist in...
- Eugene V. Koonin
- & Mart Krupovic
Nature Reviews Genetics 16 , 184–192

Rights & permissionsfor article Evolution of adaptive immunity from transposable elements combined with innate immune systems . Opens in a new window.
Comments & Opinion | 14 October 2014
Membrane vesicles in natural environments: a major challenge in viral ecology
- Nicolas Soler and Mart Krupovic: These authors contributed equally...
The ISME Journal 9 , 793–796

Rights & permissionsfor article Membrane vesicles in natural environments: a major challenge in viral ecology . Opens in a new window.
Research | 18 June 2014 | Open
Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses
- Mart Krupovic
- Mart Krupovic
- & Eugene V. Koonin
Scientific Reports 4 , 1–9

Rights & permissionsfor article Evolution of eukaryotic single-stranded DNA viruses of the <i>Bidnaviridae</i> family from genes of four other groups of widely different viruses . Opens in a new window.
Research | 6 November 2013
Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
- Mart Krupovic
- Simon Roux
- , François Enault
- , Gisèle Bronner
- , Daniel Vaulot
- , Patrick Forterre
- & Mart Krupovic
Nature Communications 4 , 1–10

Rights & permissionsfor article Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses . Opens in a new window.
Correspondence | 16 February 2012
Virophages question the existence of satellites
- NPG Nature Publishing Group UK London Nature Research 41579
- Christelle Desnues
- & Didier Raoult
Nature Reviews Microbiology 10 , 234–234

Rights & permissionsfor article Virophages question the existence of satellites . Opens in a new window.
Correspondence | 16 February 2012
Towards a more comprehensive classification of satellite viruses
- Mart Krupovic and Virginija Cvirkaite-Krupovic are...
- Mart Krupovic
- & Virginija Cvirkaite-Krupovic
Nature Reviews Microbiology 10 , 234–234

Rights & permissionsfor article Towards a more comprehensive classification of satellite viruses . Opens in a new window.
Correspondence | 5 December 2011
Sputnik and Mavirus: not more than satellite viruses
- Mart Krupovic and Virginija Cvirkaite-Krupovic are...
- Mart Krupovic
- & Virginija Cvirkaite-Krupovic
Nature Reviews Microbiology 10 , 78–78

Rights & permissionsfor article Sputnik and Mavirus: not more than satellite viruses . Opens in a new window.
Comments & Opinion | 11 October 2011
Virophages or satellite viruses?
- Mart Krupovic and Virginija Cvirkaite-Krupovic are...
- Mart Krupovic
- & Virginija Cvirkaite-Krupovic
Nature Reviews Microbiology 9 , 762–763

Rights & permissionsfor article Virophages or satellite viruses? . Opens in a new window.
Correspondence | 9 February 2009
Does the evolution of viral polymerases reflect the origin and evolution of viruses?
- Mart Krupovič and Dennis H. Bamford...
- Mart Krupovič
- & Dennis H. Bamford
Nature Reviews Microbiology 7 , 250–250

Rights & permissionsfor article Does the evolution of viral polymerases reflect the origin and evolution of viruses? . Opens in a new window.
Reviews | 1 December 2008
Virus evolution: how far does the double β-barrel viral lineage extend?
- Mart Krupovič obtained his M.Sc....
- Mart Krupovič
- & Dennis H. Bamford
Nature Reviews Microbiology 6 , 941–948

Rights & permissionsfor article Virus evolution: how far does the double β-barrel viral lineage extend? . Opens in a new window.

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