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Research | 4 December 2020 | Open
Deciphering functional redundancy in the human microbiome
- Liang Tian
- , Xu-Wen Wang
- , Ang-Kun Wu
- , Yuhang Fan
- , Jonathan Friedman
- , Amber Dahlin
- , Matthew K. Waldor
- , George M. Weinstock
- , Scott T. Weiss
- & Yang-Yu Liu
Nature Communications 11 , 1–11

Rights & permissionsfor article Deciphering functional redundancy in the human microbiome . Opens in a new window.
Research | 2 November 2020
Age-related loss of gene-to-gene transcriptional coordination among single cells
- Orr Levy
- , Guy Amit
- , Dana Vaknin
- , Tom Snir
- , Sol Efroni
- , Peter Castaldi
- , Yang-Yu Liu
- , Haim Y. Cohen
- & Amir Bashan
Nature Metabolism 2 , 1305–1315

Rights & permissionsfor article Age-related loss of gene-to-gene transcriptional coordination among single cells . Opens in a new window.
Research | 18 June 2020
Dissimilarity–Overlap analysis of replicate enrichment communities
The ISME Journal 14 , 2505–2513

Rights & permissionsfor article Dissimilarity–Overlap analysis of replicate enrichment communities . Opens in a new window.
News and Views | 27 May 2012
The missing link
- Jean-Jacques Slotine
- & Yang-Yu Liu
Nature Physics 8 , 512–513

Rights & permissionsfor article The missing link . Opens in a new window.
Research | 3 July 2020 | Open
An ecological framework to understand the efficacy of fecal microbiota transplantation
- Yandong Xiao
- , Marco Tulio Angulo
- , Songyang Lao
- , Scott T. Weiss
- & Yang-Yu Liu
Nature Communications 11 , 1–17

Rights & permissionsfor article An ecological framework to understand the efficacy of fecal microbiota transplantation . Opens in a new window.
Research | 19 October 2011
Liu et al. reply
Nature 478 , E4–E5

Rights & permissionsfor article Liu <i>et al.</i> reply . Opens in a new window.
Research | 25 May 2020
Finding key players in complex networks through deep reinforcement learning
- Changjun Fan
- , Li Zeng
- , Yizhou Sun
- & Yang-Yu Liu
Nature Machine Intelligence 2 , 317–324

Rights & permissionsfor article Finding key players in complex networks through deep reinforcement learning . Opens in a new window.
Research | 8 May 2020 | Open
Evolution of cooperation on temporal networks
- Aming Li
- , Lei Zhou
- , Qi Su
- , Sean P. Cornelius
- , Yang-Yu Liu
- , Long Wang
- & Simon A. Levin
Nature Communications 11 , 1–9

Rights & permissionsfor article Evolution of cooperation on temporal networks . Opens in a new window.
Research | 9 September 2013
Inducing effect on the percolation transition in complex networks
Nature Communications 4 , 1–6

Rights & permissionsfor article Inducing effect on the percolation transition in complex networks . Opens in a new window.
Research | 13 July 2015
Network motifs emerge from interconnections that favour stability
Nature Physics 11 , 848–852

Rights & permissionsfor article Network motifs emerge from interconnections that favour stability . Opens in a new window.
Research | 18 June 2013
Emergence of bimodality in controlling complex networks
Nature Communications 4 , 1–6

Rights & permissionsfor article Emergence of bimodality in controlling complex networks . Opens in a new window.
Research | 12 February 2015 | Open
Intrinsic dynamics induce global symmetry in network controllability
- Chen Zhao
- , Wen-Xu Wang
- , Yang-Yu Liu
- & Jean-Jacques Slotine
Scientific Reports 5 , 1–5

Rights & permissionsfor article Intrinsic dynamics induce global symmetry in network controllability . Opens in a new window.
Research | 10 August 2015
Spectrum of controlling and observing complex networks
Nature Physics 11 , 779–786

Rights & permissionsfor article Spectrum of controlling and observing complex networks . Opens in a new window.
Research | 15 January 2013 | Open
Effect of correlations on network controllability
Scientific Reports 3 , 1–7

Rights & permissionsfor article Effect of correlations on network controllability . Opens in a new window.
Research | 25 September 2019 | Open
Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection
- Abhijeet R. Sonawane
- , Liang Tian
- , Chin-Yi Chu
- , Xing Qiu
- , Lu Wang
- , Jeanne Holden-Wiltse
- , Alex Grier
- , Steven R. Gill
- , Mary T. Caserta
- , Ann R. Falsey
- , David J. Topham
- , Edward E. Walsh
- , Thomas J. Mariani
- , Scott T. Weiss
- , Edwin K. Silverman
- , Kimberly Glass
- & Yang-Yu Liu
Scientific Reports 9 , 1–14

Rights & permissionsfor article Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection . Opens in a new window.
Research | 5 March 2019 | Open
A theoretical framework for controlling complex microbial communities
Nature Communications 10 , 1–12

Rights & permissionsfor article A theoretical framework for controlling complex microbial communities . Opens in a new window.
Research | 3 July 2018 | Open
Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes
- Amitabh Sharma
- , Arda Halu
- , Julius L. Decano
- , Megha Padi
- , Yang-Yu Liu
- , Rashmi B. Prasad
- , Joao Fadista
- , Marc Santolini
- , Jörg Menche
- , Scott T. Weiss
- , Marc Vidal
- , Edwin K. Silverman
- , Masanori Aikawa
- , Albert-László Barabási
- , Leif Groop
- & Joseph Loscalzo
npj Systems Biology and Applications 4 , 1–11

Rights & permissionsfor article Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes . Opens in a new window.
Research | 11 December 2017 | Open
Mapping the ecological networks of microbial communities
Nature Communications 8 , 1–12

Rights & permissionsfor article Mapping the ecological networks of microbial communities . Opens in a new window.
Research | 8 February 2016 | Open
Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks
Scientific Reports 6 , 1–11

Rights & permissionsfor article Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks . Opens in a new window.
Research | 8 June 2016
Universality of human microbial dynamics
Nature 534 , 259–262

Rights & permissionsfor article Universality of human microbial dynamics . Opens in a new window.
Research | 31 January 2017 | Open
Articulation points in complex networks
- Liang Tian
- , Amir Bashan
- , Da-Ning Shi
- & Yang-Yu Liu
Nature Communications 8 , 1–9

Rights & permissionsfor article Articulation points in complex networks . Opens in a new window.
Research | 20 May 2015
Constructing minimal models for complex system dynamics
Nature Communications 6 , 1–8

Rights & permissionsfor article Constructing minimal models for complex system dynamics . Opens in a new window.
Research | 12 November 2014 | Open
Target control of complex networks
Nature Communications 5 , 1–8

Rights & permissionsfor article Target control of complex networks . Opens in a new window.
Research | 11 May 2011
Controllability of complex networks
Nature 473 , 167–173

Rights & permissionsfor article Controllability of complex networks . Opens in a new window.

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Deciphering functional redundancy in the human microbiome

Age-related loss of gene-to-gene transcriptional coordination among single cells

Dissimilarity–Overlap analysis of replicate enrichment communities

The missing link

An ecological framework to understand the efficacy of fecal microbiota transplantation

Liu et al. reply

Finding key players in complex networks through deep reinforcement learning

Evolution of cooperation on temporal networks

Inducing effect on the percolation transition in complex networks

Network motifs emerge from interconnections that favour stability

Emergence of bimodality in controlling complex networks

Intrinsic dynamics induce global symmetry in network controllability

Spectrum of controlling and observing complex networks

Effect of correlations on network controllability

Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection

A theoretical framework for controlling complex microbial communities

Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes

Mapping the ecological networks of microbial communities

Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks

Universality of human microbial dynamics

Articulation points in complex networks

Constructing minimal models for complex system dynamics

Target control of complex networks

Controllability of complex networks

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