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Amendments and Corrections | 10 June 2013
Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
- Gang Fang
- , Diana Munera
- , David I Friedman
- , Anjali Mandlik
- , Michael C Chao
- , Onureena Banerjee
- , Zhixing Feng
- , Bojan Losic
- , Milind C Mahajan
- , Omar J Jabado
- , Gintaras Deikus
- , Tyson A Clark
- , Khai Luong
- , Iain A Murray
- , Brigid M Davis
- , Alona Keren-Paz
- , Andrew Chess
- , Richard J Roberts
- , Jonas Korlach
- , Steve W Turner
- , Vipin Kumar
- , Matthew K Waldor
- & Eric E Schadt
Nature Biotechnology 31 , 566–566

Rights & permissionsfor article Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing . Opens in a new window.
Research | 23 April 2020 | Open
Sex chromosome evolution in parasitic nematodes of humans
- Jeremy M. Foster
- , Alexandra Grote
- , John Mattick
- , Alan Tracey
- , Yu-Chih Tsai
- , Matthew Chung
- , James A. Cotton
- , Tyson A. Clark
- , Adam Geber
- , Nancy Holroyd
- , Jonas Korlach
- , Yichao Li
- , Silvia Libro
- , Sara Lustigman
- , Michelle L. Michalski
- , Michael Paulini
- , Matthew B. Rogers
- , Laura Teigen
- , Alan Twaddle
- , Lonnie Welch
- , Matthew Berriman
- , Julie C. Dunning Hotopp
- & Elodie Ghedin
Nature Communications 11 , 1–12

Rights & permissionsfor article Sex chromosome evolution in parasitic nematodes of humans . Opens in a new window.
Research | 20 November 2011
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine
- Chun-Xiao Song
- , Tyson A Clark
- , Xing-Yu Lu
- , Andrey Kislyuk
- , Qing Dai
- , Stephen W Turner
- , Chuan He
- & Jonas Korlach
Nature Methods 9 , 75–77

Rights & permissionsfor article Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine . Opens in a new window.
Research | 9 May 2010
Direct detection of DNA methylation during single-molecule, real-time sequencing
- Benjamin A Flusberg
- , Dale R Webster
- , Jessica H Lee
- , Kevin J Travers
- , Eric C Olivares
- , Tyson A Clark
- , Jonas Korlach
- & Stephen W Turner
Nature Methods 7 , 461–465

Rights & permissionsfor article Direct detection of DNA methylation during single-molecule, real-time sequencing . Opens in a new window.
Research | 8 February 2019 | Open
CRISPR/Cas9-targeted enrichment and long-read sequencing of the Fuchs endothelial corneal dystrophy–associated TCF4 triplet repeat
Genetics in Medicine 21 , 2092–2102

Rights & permissionsfor article CRISPR/Cas9-targeted enrichment and long-read sequencing of the Fuchs endothelial corneal dystrophy–associated TCF4 triplet repeat . Opens in a new window.
Research | 10 September 2018 | Open
SMRT-Cappable-seq reveals complex operon variants in bacteria
Nature Communications 9 , 1–11

Rights & permissionsfor article SMRT-Cappable-seq reveals complex operon variants in bacteria . Opens in a new window.
Research | 23 November 2017 | Open
Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori
Scientific Reports 7 , 1–14

Rights & permissionsfor article Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori . Opens in a new window.
Research | 24 June 2016 | Open
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
- Bo Wang
- , Elizabeth Tseng
- , Michael Regulski
- , Tyson A Clark
- , Ting Hon
- , Yinping Jiao
- , Zhenyuan Lu
- , Andrew Olson
- , Joshua C. Stein
- & Doreen Ware
Nature Communications 7 , 1–13

Rights & permissionsfor article Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing . Opens in a new window.
Research | 5 June 2014
Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences
- Bo Cao
- , Chao Chen
- , Michael S. DeMott
- , Qiuxiang Cheng
- , Tyson A. Clark
- , Xiaolin Xiong
- , Xiaoqing Zheng
- , Vincent Butty
- , Stuart S. Levine
- , George Yuan
- , Matthew Boitano
- , Khai Luong
- , Yi Song
- , Xiufen Zhou
- , Zixin Deng
- , Stephen W. Turner
- , Jonas Korlach
- , Delin You
- , Lianrong Wang
- , Shi Chen
- & Peter C. Dedon
Nature Communications 5 , 1–13

Rights & permissionsfor article Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences . Opens in a new window.
Research | 28 July 2015 | Open
A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae
Nature Communications 6 , 1–12

Rights & permissionsfor article A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae . Opens in a new window.
Research | 30 September 2014 | Open
A random six-phase switch regulates pneumococcal virulence via global epigenetic changes
- Ana Sousa Manso
- , Melissa H. Chai
- , John M. Atack
- , Leonardo Furi
- , Megan De Ste Croix
- , Richard Haigh
- , Claudia Trappetti
- , Abiodun D. Ogunniyi
- , Lucy K. Shewell
- , Matthew Boitano
- , Tyson A. Clark
- , Jonas Korlach
- , Matthew Blades
- , Evgeny Mirkes
- , Alexander N. Gorban
- , James C. Paton
- , Michael P. Jennings
- & Marco R. Oggioni
Nature Communications 5 , 1–9

Rights & permissionsfor article A random six-phase switch regulates pneumococcal virulence via global epigenetic changes . Opens in a new window.
Research | 30 January 2005
Exploring functional relationships between components of the gene expression machinery
- Todd Burckin
- , Roland Nagel
- , Yael Mandel-Gutfreund
- , Lily Shiue
- , Tyson A Clark
- , Jean-Leon Chong
- , Tien-Hsien Chang
- , Sharon Squazzo
- , Grant Hartzog
- & Manuel Ares Jr
Nature Structural & Molecular Biology 12 , 175–182

Rights & permissionsfor article Exploring functional relationships between components of the gene expression machinery . Opens in a new window.
Research | 24 January 2010
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
- Hongqing Du
- , Melissa S Cline
- , Robert J Osborne
- , Daniel L Tuttle
- , Tyson A Clark
- , John Paul Donohue
- , Megan P Hall
- , Lily Shiue
- , Maurice S Swanson
- , Charles A Thornton
- & Manuel Ares Jr
Nature Structural & Molecular Biology 17 , 187–193

Rights & permissionsfor article Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy . Opens in a new window.
Research | 8 November 2012
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
- Gang Fang
- , Diana Munera
- , David I Friedman
- , Anjali Mandlik
- , Michael C Chao
- , Onureena Banerjee
- , Zhixing Feng
- , Bojan Losic
- , Milind C Mahajan
- , Omar J Jabado
- , Gintaras Deikus
- , Tyson A Clark
- , Khai Luong
- , Iain A Murray
- , Brigid M Davis
- , Alona Keren-Paz
- , Andrew Chess
- , Richard J Roberts
- , Jonas Korlach
- , Steve W Turner
- , Vipin Kumar
- , Matthew K Waldor
- & Eric E Schadt
Nature Biotechnology 30 , 1232–1239

Rights & permissionsfor article Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing . Opens in a new window.
Research | 15 August 2010
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
- Miriam Llorian
- , Schraga Schwartz
- , Tyson A Clark
- , Dror Hollander
- , Lit-Yeen Tan
- , Rachel Spellman
- , Adele Gordon
- , Anthony C Schweitzer
- , Pierre de la Grange
- , Gil Ast
- & Christopher W J Smith
Nature Structural & Molecular Biology 17 , 1114–1123

Rights & permissionsfor article Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB . Opens in a new window.
Research | 2 November 2008
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
- Donny D. Licatalosi
- , Aldo Mele
- , John J. Fak
- , Jernej Ule
- , Melis Kayikci
- , Sung Wook Chi
- , Tyson A. Clark
- , Anthony C. Schweitzer
- , John E. Blume
- , Xuning Wang
- , Jennifer C. Darnell
- & Robert B. Darnell
Nature 456 , 464–469

Rights & permissionsfor article HITS-CLIP yields genome-wide insights into brain alternative RNA processing . Opens in a new window.

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Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Sex chromosome evolution in parasitic nematodes of humans

Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine

Direct detection of DNA methylation during single-molecule, real-time sequencing

CRISPR/Cas9-targeted enrichment and long-read sequencing of the Fuchs endothelial corneal dystrophy–associated TCF4 triplet repeat

SMRT-Cappable-seq reveals complex operon variants in bacteria

Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae

A random six-phase switch regulates pneumococcal virulence via global epigenetic changes

Exploring functional relationships between components of the gene expression machinery

Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

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