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Correspondence | 31 January 2019
Proportional changes in the gut microbiome: a risk factor for cardiovascular disease and dementia?
- Naoki Saji
- , Takayoshi Hisada
- , Tsuyoshi Tsuduki
- , Shumpei Niida
- , Kenji Toba
- & Takashi Sakurai
Hypertension Research 42 , 1090–1091

Rights & permissionsfor article Proportional changes in the gut microbiome: a risk factor for cardiovascular disease and dementia? . Opens in a new window.
Research | 30 January 2019 | Open
Analysis of the relationship between the gut microbiome and dementia: a cross-sectional study conducted in Japan
- Naoki Saji
- , Shumpei Niida
- , Kenta Murotani
- , Takayoshi Hisada
- , Tsuyoshi Tsuduki
- , Taiki Sugimoto
- , Ai Kimura
- , Kenji Toba
- & Takashi Sakurai
Scientific Reports 9 , 1–9

Rights & permissionsfor article Analysis of the relationship between the gut microbiome and dementia: a cross-sectional study conducted in Japan . Opens in a new window.
Research | 8 June 2020
Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases
- Kazuyoshi Ishigaki
- , Masato Akiyama
- , Masahiro Kanai
- , Atsushi Takahashi
- , Eiryo Kawakami
- , Hiroki Sugishita
- , Saori Sakaue
- , Nana Matoba
- , Siew-Kee Low
- , Yukinori Okada
- , Chikashi Terao
- , Tiffany Amariuta
- , Steven Gazal
- , Yuta Kochi
- , Momoko Horikoshi
- , Ken Suzuki
- , Kaoru Ito
- , Satoshi Koyama
- , Kouichi Ozaki
- , Shumpei Niida
- , Yasushi Sakata
- , Yasuhiko Sakata
- , Takashi Kohno
- , Kouya Shiraishi
- , Yukihide Momozawa
- , Makoto Hirata
- , Koichi Matsuda
- , Masashi Ikeda
- , Nakao Iwata
- , Shiro Ikegawa
- , Ikuyo Kou
- , Toshihiro Tanaka
- , Hidewaki Nakagawa
- , Akari Suzuki
- , Tomomitsu Hirota
- , Mayumi Tamari
- , Kazuaki Chayama
- , Daiki Miki
- , Masaki Mori
- , Satoshi Nagayama
- , Yataro Daigo
- , Yoshio Miki
- , Toyomasa Katagiri
- , Osamu Ogawa
- , Wataru Obara
- , Hidemi Ito
- , Teruhiko Yoshida
- , Issei Imoto
- , Takashi Takahashi
- , Chizu Tanikawa
- , Takao Suzuki
- , Nobuaki Sinozaki
- , Shiro Minami
- , Hiroki Yamaguchi
- , Satoshi Asai
- , Yasuo Takahashi
- , Ken Yamaji
- , Kazuhisa Takahashi
- , Tomoaki Fujioka
- , Ryo Takata
- , Hideki Yanai
- , Akihide Masumoto
- , Yukihiro Koretsune
- , Hiromu Kutsumi
- , Masahiko Higashiyama
- , Shigeo Murayama
- , Naoko Minegishi
- , Kichiya Suzuki
- , Kozo Tanno
- , Atsushi Shimizu
- , Taiki Yamaji
- , Motoki Iwasaki
- , Norie Sawada
- , Hirokazu Uemura
- , Keitaro Tanaka
- , Mariko Naito
- , Makoto Sasaki
- , Kenji Wakai
- , Shoichiro Tsugane
- , Masayuki Yamamoto
- , Kazuhiko Yamamoto
- , Yoshinori Murakami
- , Yusuke Nakamura
- , Soumya Raychaudhuri
- , Johji Inazawa
- , Toshimasa Yamauchi
- , Takashi Kadowaki
- , Michiaki Kubo
- & Yoichiro Kamatani
Nature Genetics 52 , 669–679

Rights & permissionsfor article Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases . Opens in a new window.
Amendments and Corrections | 4 July 2018 | Open
Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
- Daichi Shigemizu
- , Fuyuki Miya
- , Shintaro Akiyama
- , Shujiro Okuda
- , Keith A. Boroevich
- , Akihiro Fujimoto
- , Hidewaki Nakagawa
- , Kouichi Ozaki
- , Shumpei Niida
- , Yonehiro Kanemura
- , Nobuhiko Okamoto
- , Shinji Saitoh
- , Mitsuhiro Kato
- , Mami Yamasaki
- , Tatsuo Matsunaga
- , Hideki Mutai
- , Kenjiro Kosaki
- & Tatsuhiko Tsunoda
Scientific Reports 8 , 1–2

Rights & permissionsfor article Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating <i>de novo</i> assembly and gapped global-local alignment with split read analysis . Opens in a new window.
Research | 4 April 2018 | Open
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
- Daichi Shigemizu
- , Fuyuki Miya
- , Shintaro Akiyama
- , Shujiro Okuda
- , Keith A Boroevich
- , Akihiro Fujimoto
- , Hidewaki Nakagawa
- , Kouichi Ozaki
- , Shumpei Niida
- , Yonehiro Kanemura
- , Nobuhiko Okamoto
- , Shinji Saitoh
- , Mitsuhiro Kato
- , Mami Yamasaki
- , Tatsuo Matsunaga
- , Hideki Mutai
- , Kenjiro Kosaki
- & Tatsuhiko Tsunoda
Scientific Reports 8 , 1–9

Rights & permissionsfor article IMSindel: An accurate intermediate-size indel detection tool incorporating <i>de novo</i> assembly and gapped global-local alignment with split read analysis . Opens in a new window.
Research | 18 May 2020 | Open
Relationship between dementia and gut microbiome-associated metabolites: a cross-sectional study in Japan
- Naoki Saji
- , Kenta Murotani
- , Takayoshi Hisada
- , Tadao Kunihiro
- , Tsuyoshi Tsuduki
- , Taiki Sugimoto
- , Ai Kimura
- , Shumpei Niida
- , Kenji Toba
- & Takashi Sakurai
Scientific Reports 10 , 1–11

Rights & permissionsfor article Relationship between dementia and gut microbiome-associated metabolites: a cross-sectional study in Japan . Opens in a new window.
Research | 16 January 2020 | Open
The matrix vesicle cargo miR-125b accumulates in the bone matrix, inhibiting bone resorption in mice
- Tomoko Minamizaki
- , Yuko Nakao
- , Yasumasa Irie
- , Faisal Ahmed
- , Shota Itoh
- , Nushrat Sarmin
- , Hirotaka Yoshioka
- , Asako Nobukiyo
- , Chise Fujimoto
- , Shumpei Niida
- , Yusuke Sotomaru
- , Kotaro Tanimoto
- , Katsuyuki Kozai
- , Toshie Sugiyama
- , Edith Bonnelye
- , Yuichiro Takei
- & Yuji Yoshiko
Communications Biology 3 , 1–11

Rights & permissionsfor article The matrix vesicle cargo miR-125b accumulates in the bone matrix, inhibiting bone resorption in mice . Opens in a new window.
Research | 18 December 2019 | Open
The relationship between the gut microbiome and mild cognitive impairment in patients without dementia: a cross-sectional study conducted in Japan
- Naoki Saji
- , Kenta Murotani
- , Takayoshi Hisada
- , Tsuyoshi Tsuduki
- , Taiki Sugimoto
- , Ai Kimura
- , Shumpei Niida
- , Kenji Toba
- & Takashi Sakurai
Scientific Reports 9 , 1–10

Rights & permissionsfor article The relationship between the gut microbiome and mild cognitive impairment in patients without dementia: a cross-sectional study conducted in Japan . Opens in a new window.
Research | 25 February 2019 | Open
Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data
- Daichi Shigemizu
- , Shintaro Akiyama
- , Yuya Asanomi
- , Keith A. Boroevich
- , Alok Sharma
- , Tatsuhiko Tsunoda
- , Kana Matsukuma
- , Makiko Ichikawa
- , Hiroko Sudo
- , Satoko Takizawa
- , Takashi Sakurai
- , Kouichi Ozaki
- , Takahiro Ochiya
- & Shumpei Niida
Communications Biology 2 , 1–8

Rights & permissionsfor article Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data . Opens in a new window.
Research | 24 September 2018 | Open
MyD88 signaling causes autoimmune sialadenitis through formation of high endothelial venules and upregulation of LTβ receptor-mediated signaling
Scientific Reports 8 , 1–12

Rights & permissionsfor article MyD88 signaling causes autoimmune sialadenitis through formation of high endothelial venules and upregulation of LTβ receptor-mediated signaling . Opens in a new window.
Research | 17 October 2018 | Open
Integrated extracellular microRNA profiling for ovarian cancer screening
- Akira Yokoi
- , Juntaro Matsuzaki
- , Yusuke Yamamoto
- , Yutaka Yoneoka
- , Kenta Takahashi
- , Hanako Shimizu
- , Takashi Uehara
- , Mitsuya Ishikawa
- , Shun-ichi Ikeda
- , Takumi Sonoda
- , Junpei Kawauchi
- , Satoko Takizawa
- , Yoshiaki Aoki
- , Shumpei Niida
- , Hiromi Sakamoto
- , Ken Kato
- , Tomoyasu Kato
- & Takahiro Ochiya
Nature Communications 9 , 1–10

Rights & permissionsfor article Integrated extracellular microRNA profiling for ovarian cancer screening . Opens in a new window.
Research | 21 April 2017 | Open
Basal autophagy prevents autoactivation or enhancement of inflammatory signals by targeting monomeric MyD88
- Takeshi Into
- , Toshi Horie
- , Megumi Inomata
- , Jin Gohda
- , Jun-ichiro Inoue
- , Yukitaka Murakami
- & Shumpei Niida
Scientific Reports 7 , 1–14

Rights & permissionsfor article Basal autophagy prevents autoactivation or enhancement of inflammatory signals by targeting monomeric MyD88 . Opens in a new window.
Research | 20 June 2017 | Open
A subset of cerebrovascular pericytes originates from mature macrophages in the very early phase of vascular development in CNS
- Seiji Yamamoto
- , Masashi Muramatsu
- , Erika Azuma
- , Masashi Ikutani
- , Yoshinori Nagai
- , Hiroshi Sagara
- , Bon-Nyeo Koo
- , Satomi Kita
- , Erin O’Donnell
- , Tsuyoshi Osawa
- , Hiroyuki Takahashi
- , Ken-ichi Takano
- , Mitsuko Dohmoto
- , Michiya Sugimori
- , Isao Usui
- , Yasuhide Watanabe
- , Noboru Hatakeyama
- , Takahiro Iwamoto
- , Issei Komuro
- , Kiyoshi Takatsu
- , Kazuyuki Tobe
- , Shumpei Niida
- , Naoyuki Matsuda
- , Masabumi Shibuya
- & Masakiyo Sasahara
Scientific Reports 7 , 1–16

Rights & permissionsfor article A subset of cerebrovascular pericytes originates from mature macrophages in the very early phase of vascular development in CNS . Opens in a new window.
Research | 24 October 2016 | Open
γ-Glutamyltranspeptidase is an endogenous activator of Toll-like receptor 4-mediated osteoclastogenesis
- Sawako Moriwaki
- , Takeshi Into
- , Keiko Suzuki
- , Mutsumi Miyauchi
- , Takashi Takata
- , Keigo Shibayama
- & Shumpei Niida
Scientific Reports 6 , 1–12

Rights & permissionsfor article γ-Glutamyltranspeptidase is an endogenous activator of Toll-like receptor 4-mediated osteoclastogenesis . Opens in a new window.
Research | 17 February 2015 | Open
Inflammation-induced endothelial cell-derived extracellular vesicles modulate the cellular status of pericytes
- Seiji Yamamoto
- , Shumpei Niida
- , Erika Azuma
- , Tsutomu Yanagibashi
- , Masashi Muramatsu
- , Ting Ting Huang
- , Hiroshi Sagara
- , Sayuri Higaki
- , Masashi Ikutani
- , Yoshinori Nagai
- , Kiyoshi Takatsu
- , Kenji Miyazaki
- , Takeru Hamashima
- , Hisashi Mori
- , Naoyuki Matsuda
- , Yoko Ishii
- & Masakiyo Sasahara
Scientific Reports 5 , 1–10

Rights & permissionsfor article Inflammation-induced endothelial cell-derived extracellular vesicles modulate the cellular status of pericytes . Opens in a new window.

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Proportional changes in the gut microbiome: a risk factor for cardiovascular disease and dementia?

Analysis of the relationship between the gut microbiome and dementia: a cross-sectional study conducted in Japan

Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases

Publisher Correction: IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis

Relationship between dementia and gut microbiome-associated metabolites: a cross-sectional study in Japan

The matrix vesicle cargo miR-125b accumulates in the bone matrix, inhibiting bone resorption in mice

The relationship between the gut microbiome and mild cognitive impairment in patients without dementia: a cross-sectional study conducted in Japan

Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data

MyD88 signaling causes autoimmune sialadenitis through formation of high endothelial venules and upregulation of LTβ receptor-mediated signaling

Integrated extracellular microRNA profiling for ovarian cancer screening

Basal autophagy prevents autoactivation or enhancement of inflammatory signals by targeting monomeric MyD88

A subset of cerebrovascular pericytes originates from mature macrophages in the very early phase of vascular development in CNS

γ-Glutamyltranspeptidase is an endogenous activator of Toll-like receptor 4-mediated osteoclastogenesis

Inflammation-induced endothelial cell-derived extracellular vesicles modulate the cellular status of pericytes

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