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Amendments and Corrections | 18 May 2016
Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera
- Stavroula K Hatzios
- , Sören Abel
- , Julianne Martell
- , Troy Hubbard
- , Jumpei Sasabe
- , Diana Munera
- , Lars Clark
- , Daniel A Bachovchin
- , Firdausi Qadri
- , Edward T Ryan
- , Brigid M Davis
- , Eranthie Weerapana
- & Matthew K Waldor
Nature Chemical Biology 12 , 466–466

Rights & permissionsfor article Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera . Opens in a new window.
Research | 4 December 2020 | Open
Deciphering functional redundancy in the human microbiome
- Liang Tian
- , Xu-Wen Wang
- , Ang-Kun Wu
- , Yuhang Fan
- , Jonathan Friedman
- , Amber Dahlin
- , Matthew K. Waldor
- , George M. Weinstock
- , Scott T. Weiss
- & Yang-Yu Liu
Nature Communications 11 , 1–11

Rights & permissionsfor article Deciphering functional redundancy in the human microbiome . Opens in a new window.
News and Views | 20 June 2019
An ‘i’ for ingenuity
- Jonathan D. D’Gama
- & Matthew K. Waldor
Nature Microbiology 4 , 1071–1072

Rights & permissionsfor article An ‘i’ for ingenuity . Opens in a new window.
Amendments and Corrections | 10 June 2013
Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
- Gang Fang
- , Diana Munera
- , David I Friedman
- , Anjali Mandlik
- , Michael C Chao
- , Onureena Banerjee
- , Zhixing Feng
- , Bojan Losic
- , Milind C Mahajan
- , Omar J Jabado
- , Gintaras Deikus
- , Tyson A Clark
- , Khai Luong
- , Iain A Murray
- , Brigid M Davis
- , Alona Keren-Paz
- , Andrew Chess
- , Richard J Roberts
- , Jonas Korlach
- , Steve W Turner
- , Vipin Kumar
- , Matthew K Waldor
- & Eric E Schadt
Nature Biotechnology 31 , 566–566

Rights & permissionsfor article Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing . Opens in a new window.
News and Views | 3 August 2000
Treasure trove for cholera research
- Matthew K. Waldor
- & Debabrata RayChaudhuri
Nature 406 , 469–470

Rights & permissionsfor article Treasure trove for cholera research . Opens in a new window.
Research | 8 June 2020
Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications
Nature Chemical Biology 16 , 964–972

Rights & permissionsfor article Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications . Opens in a new window.
Research | 21 December 2003
SOS response promotes horizontal dissemination of antibiotic resistance genes
Nature 427 , 72–74

Rights & permissionsfor article SOS response promotes horizontal dissemination of antibiotic resistance genes . Opens in a new window.
Research | 18 November 2012
Fucose sensing regulates bacterial intestinal colonization
Nature 492 , 113–117

Rights & permissionsfor article Fucose sensing regulates bacterial intestinal colonization . Opens in a new window.
Research | 6 June 2002
Filamentous phage integration requires the host recombinases XerC and XerD
- Kathryn E. Huber
- & Matthew K. Waldor
Nature 417 , 656–659

Rights & permissionsfor article Filamentous phage integration requires the host recombinases XerC and XerD . Opens in a new window.
Research | 1 October 2018
Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae
- Emilio Bueno
- , Brandon Sit
- , Matthew K. Waldor
- & Felipe Cava
Nature Microbiology 3 , 1346–1353

Rights & permissionsfor article Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae . Opens in a new window.
Reviews | 12 July 2018
Vibrio spp. infections
Nature Reviews Disease Primers 4 , 1–19

Rights & permissionsfor article Vibrio spp. infections . Opens in a new window.
Research | 11 December 2017 | Open
Mapping the ecological networks of microbial communities
Nature Communications 8 , 1–12

Rights & permissionsfor article Mapping the ecological networks of microbial communities . Opens in a new window.
Research | 25 July 2016
Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota
- Jumpei Sasabe
- , Yurika Miyoshi
- , Seth Rakoff-Nahoum
- , Ting Zhang
- , Masashi Mita
- , Brigid M. Davis
- , Kenji Hamase
- & Matthew K. Waldor
Nature Microbiology 1 , 1–7

Rights & permissionsfor article Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota . Opens in a new window.
Research | 22 February 2016
Chemoproteomic profiling of host and pathogen enzymes active in cholera
- Stavroula K Hatzios
- , Sören Abel
- , Julianne Martell
- , Troy Hubbard
- , Jumpei Sasabe
- , Diana Munera
- , Lars Clark
- , Daniel A Bachovchin
- , Firdausi Qadri
- , Edward T Ryan
- , Brigid M Davis
- , Eranthie Weerapana
- & Matthew K Waldor
Nature Chemical Biology 12 , 268–274

Rights & permissionsfor article Chemoproteomic profiling of host and pathogen enzymes active in cholera . Opens in a new window.
Reviews | 19 January 2016
The design and analysis of transposon insertion sequencing experiments
Nature Reviews Microbiology 14 , 119–128

Rights & permissionsfor article The design and analysis of transposon insertion sequencing experiments . Opens in a new window.
Research | 20 January 2014
Autotransporters but not pAA are critical for rabbit colonization by Shiga toxin-producing Escherichia coli O104:H4
- Diana Munera
- , Jennifer M. Ritchie
- , Stavroula K. Hatzios
- , Rod Bronson
- , Gang Fang
- , Eric E. Schadt
- , Brigid M. Davis
- & Matthew K. Waldor
Nature Communications 5 , 1–9

Rights & permissionsfor article Autotransporters but not pAA are critical for rabbit colonization by Shiga toxin-producing Escherichia coli O104:H4 . Opens in a new window.
Research | 15 June 2015 | Open
Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes
- John Beaulaurier
- , Xue-Song Zhang
- , Shijia Zhu
- , Robert Sebra
- , Chaggai Rosenbluh
- , Gintaras Deikus
- , Nan Shen
- , Diana Munera
- , Matthew K. Waldor
- , Andrew Chess
- , Martin J. Blaser
- , Eric E. Schadt
- & Gang Fang
Nature Communications 6 , 1–12

Rights & permissionsfor article Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes . Opens in a new window.
Research | 19 January 2015
Sequence tag–based analysis of microbial population dynamics
Nature Methods 12 , 223–226

Rights & permissionsfor article Sequence tag–based analysis of microbial population dynamics . Opens in a new window.
Reviews | 5 July 2010
Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow
- Rachel A. F. Wozniak
- & Matthew K. Waldor
Nature Reviews Microbiology 8 , 552–563

Rights & permissionsfor article Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow . Opens in a new window.
Research | 8 November 2012
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
- Gang Fang
- , Diana Munera
- , David I Friedman
- , Anjali Mandlik
- , Michael C Chao
- , Onureena Banerjee
- , Zhixing Feng
- , Bojan Losic
- , Milind C Mahajan
- , Omar J Jabado
- , Gintaras Deikus
- , Tyson A Clark
- , Khai Luong
- , Iain A Murray
- , Brigid M Davis
- , Alona Keren-Paz
- , Andrew Chess
- , Richard J Roberts
- , Jonas Korlach
- , Steve W Turner
- , Vipin Kumar
- , Matthew K Waldor
- & Eric E Schadt
Nature Biotechnology 30 , 1232–1239

Rights & permissionsfor article Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing . Opens in a new window.
Research | 1 July 2012
A hybrid approach for the automated finishing of bacterial genomes
- Ali Bashir
- , Aaron A Klammer
- , William P Robins
- , Chen-Shan Chin
- , Dale Webster
- , Ellen Paxinos
- , David Hsu
- , Meredith Ashby
- , Susana Wang
- , Paul Peluso
- , Robert Sebra
- , Jon Sorenson
- , James Bullard
- , Jackie Yen
- , Marie Valdovino
- , Emilia Mollova
- , Khai Luong
- , Steven Lin
- , Brianna LaMay
- , Amruta Joshi
- , Lori Rowe
- , Michael Frace
- , Cheryl L Tarr
- , Maryann Turnsek
- , Brigid M Davis
- , Andrew Kasarskis
- , John J Mekalanos
- , Matthew K Waldor
- & Eric E Schadt
Nature Biotechnology 30 , 701–707

Rights & permissionsfor article A hybrid approach for the automated finishing of bacterial genomes . Opens in a new window.

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Erratum: Chemoproteomic profiling of host and pathogen enzymes active in cholera

Deciphering functional redundancy in the human microbiome

An ‘i’ for ingenuity

Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

Treasure trove for cholera research

Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications

SOS response promotes horizontal dissemination of antibiotic resistance genes

Fucose sensing regulates bacterial intestinal colonization

Filamentous phage integration requires the host recombinases XerC and XerD

Anaerobic nitrate reduction divergently governs population expansion of the enteropathogen Vibrio cholerae

Vibrio spp. infections

Mapping the ecological networks of microbial communities

Interplay between microbial d-amino acids and host d-amino acid oxidase modifies murine mucosal defence and gut microbiota

Chemoproteomic profiling of host and pathogen enzymes active in cholera

The design and analysis of transposon insertion sequencing experiments

Autotransporters but not pAA are critical for rabbit colonization by Shiga toxin-producing Escherichia coli O104:H4

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

Sequence tag–based analysis of microbial population dynamics

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

A hybrid approach for the automated finishing of bacterial genomes

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