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Research | 30 November 2020 | Open
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
- mark.robinson@imls.uzh.ch
Nature Communications 11 , 1–12

Rights & permissionsfor article <i>muscat</i> detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data . Opens in a new window.
Research | 31 July 2019 | Open
A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes
- mark.robinson@imls.uzh.ch
Nature Communications 10 , 1–14

Rights & permissionsfor article A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes . Opens in a new window.
Research | 14 May 2019 | Open
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering
- mark.robinson@imls.uzh.ch
Communications Biology 2 , 1–11

Rights & permissionsfor article diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering . Opens in a new window.
Research | 26 February 2018
Bias, robustness and scalability in single-cell differential expression analysis
- mark.robinson@imls.uzh.ch
- Charlotte Soneson
- & Mark D Robinson
Nature Methods 15 , 255–261

Rights & permissionsfor article Bias, robustness and scalability in single-cell differential expression analysis . Opens in a new window.
Correspondence | 30 March 2016
iCOBRA: open, reproducible, standardized and live method benchmarking
- mark.robinson@imls.uzh.ch
- Charlotte Soneson
- & Mark D Robinson
Nature Methods 13 , 283–283

Rights & permissionsfor article iCOBRA: open, reproducible, standardized and live method benchmarking . Opens in a new window.
Correspondence | 12 July 2016
CrispRVariants charts the mutation spectrum of genome engineering experiments
- mark.robinson@imls.uzh.ch
- Helen Lindsay
- , Alexa Burger
- , Berthin Biyong
- , Anastasia Felker
- , Christopher Hess
- , Jonas Zaugg
- , Elena Chiavacci
- , Carolin Anders
- , Martin Jinek
- , Christian Mosimann
- & Mark D Robinson
Nature Biotechnology 34 , 701–702

Rights & permissionsfor article CrispRVariants charts the mutation spectrum of genome engineering experiments . Opens in a new window.
Protocols | 22 August 2013
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
- mark.robinson@imls.uzh.ch
- Simon Anders
- , Davis J McCarthy
- , Yunshun Chen
- , Michal Okoniewski
- , Gordon K Smyth
- , Wolfgang Huber
- & Mark D Robinson
Nature Protocols 8 , 1765–1786

Rights & permissionsfor article Count-based differential expression analysis of RNA sequencing data using R and Bioconductor . Opens in a new window.

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