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Research | 23 September 2019
A genomic view of the reef-building coral Porites lutea and its microbial symbionts
- Steven J. Robbins
- , Caitlin M. Singleton
- , Cheong Xin Chan
- , Lauren F. Messer
- , Aileen U. Geers
- , Hua Ying
- , Alexander Baker
- , Sara C. Bell
- , Kathleen M. Morrow
- , Mark A. Ragan
- , David J. Miller
- , Sylvain Forêt
- , Eldon Ball
- , Roger Beeden
- , Michael Berumen
- , Manuel Aranda
- , Timothy Ravasi
- , Pim Bongaerts
- , Ove Hoegh-Guldberg
- , Ira Cooke
- , Bill Leggat
- , Susan Sprungala
- , Anna Fitzgerald
- , Catherine Shang
- , Petra Lundgren
- , Theresa Fyffe
- , Francesco Rubino
- , Madeleine van Oppen
- , Karen Weynberg
- , Steven J. Robbins
- , Caitlin M. Singleton
- , Cheong Xin Chan
- , Lauren F. Messer
- , Aileen U. Geers
- , Hua Ying
- , Alexander Baker
- , Sara C. Bell
- , Kathleen M. Morrow
- , Mark A. Ragan
- , David J. Miller
- , Sylvain Foret
- , Christian R. Voolstra
- , Gene W. Tyson
- , David G. Bourne
- , Christian R. Voolstra
- , Gene W. Tyson
- & David G. Bourne
Nature Microbiology 4 , 2090–2100

Rights & permissionsfor article A genomic view of the reef-building coral Porites lutea and its microbial symbionts . Opens in a new window.
Amendments and Corrections | 1 June 2010
Erratum: Visualization of image data from cells to organisms
- Thomas Walter
- , David W Shattuck
- , Richard Baldock
- , Mark E Bastin
- , Anne E Carpenter
- , Suzanne Duce
- , Jan Ellenberg
- , Adam Fraser
- , Nicholas Hamilton
- , Steve Pieper
- , Mark A Ragan
- , Jurgen E Schneider
- , Pavel Tomancak
- & Jean-Karim Hériché
Nature Methods 7 , 479–479

Rights & permissionsfor article Erratum: Visualization of image data from cells to organisms . Opens in a new window.
Amendments and Corrections | 23 August 2018 | Open
Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
- Huanle Liu
- , Timothy G. Stephens
- , Raúl A. González-Pech
- , Victor H. Beltran
- , Bruno Lapeyre
- , Pim Bongaerts
- , Ira Cooke
- , Manuel Aranda
- , David G. Bourne
- , Sylvain Forêt
- , David J. Miller
- , Madeleine J. H. van Oppen
- , Christian R. Voolstra
- , Mark A. Ragan
- & Cheong Xin Chan
Communications Biology 1 , 1–1

Rights & permissionsfor article Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis . Opens in a new window.
16 January 2003
Microbial phylogenomics: Branching out
Nature 421 , 217–217

Rights & permissionsfor article Microbial phylogenomics: Branching out . Opens in a new window.
Research | 2 March 2015 | Open
Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere
Scientific Reports 5 , 1–6

Rights & permissionsfor article Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere . Opens in a new window.
Research | 4 June 2008
Identification of human haploinsufficient genes and their genomic proximity to segmental duplications
European Journal of Human Genetics 16 , 1350–1357

Rights & permissionsfor article Identification of human haploinsufficient genes and their genomic proximity to segmental duplications . Opens in a new window.
Research | 21 November 2018 | Open
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions
Scientific Reports 8 , 1–11

Rights & permissionsfor article Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions . Opens in a new window.
Research | 17 July 2018 | Open
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
- Huanle Liu
- , Timothy G. Stephens
- , Raúl A. González-Pech
- , Victor H. Beltran
- , Bruno Lapeyre
- , Pim Bongaerts
- , Ira Cooke
- , Manuel Aranda
- , David G. Bourne
- , Sylvain Forêt
- , David J. Miller
- , Madeleine J. H. van Oppen
- , Christian R. Voolstra
- , Mark A. Ragan
- & Cheong Xin Chan
Communications Biology 1 , 1–11

Rights & permissionsfor article Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis . Opens in a new window.
Research | 10 January 2018 | Open
Deciphering the nature of the coral–Chromera association
- Amin R Mohamed
- , Vivian R Cumbo
- , Saki Harii
- , Chuya Shinzato
- , Cheong Xin Chan
- , Mark A Ragan
- , Nori Satoh
- , Eldon E Ball
- & David J Miller
The ISME Journal 12 , 776–790

Rights & permissionsfor article Deciphering the nature of the coral–Chromera association . Opens in a new window.
Research | 9 August 2017 | Open
Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence
Nature Communications 8 , 1–9

Rights & permissionsfor article Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence . Opens in a new window.
Research | 3 November 2017 | Open
Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium
Scientific Reports 7 , 1–10

Rights & permissionsfor article Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium . Opens in a new window.
Reviews | 19 October 2016 | Open
Palmitoylation: a protein S-acylation with implications for breast cancer
- Alison M Anderson
- & Mark A Ragan
npj Breast Cancer 2 , 1–10

Rights & permissionsfor article Palmitoylation: a protein S-acylation with implications for breast cancer . Opens in a new window.
Research | 18 February 2016 | Open
Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks
npj Systems Biology and Applications 2 , 1–9

Rights & permissionsfor article Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks . Opens in a new window.
Research | 21 November 2016 | Open
Crosstalk between sugarcane and a plant-growth promoting Burkholderia species
Scientific Reports 6 , 1–14

Rights & permissionsfor article Crosstalk between sugarcane and a plant-growth promoting Burkholderia species . Opens in a new window.
Research | 25 July 2016 | Open
Exploring lateral genetic transfer among microbial genomes using TF-IDF
Scientific Reports 6 , 1–16

Rights & permissionsfor article Exploring lateral genetic transfer among microbial genomes using TF-IDF . Opens in a new window.
Research | 4 January 2017 | Open
The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells
Scientific Reports 7 , 1–13

Rights & permissionsfor article The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells . Opens in a new window.
Research | 25 July 2016 | Open
A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF
Scientific Reports 6 , 1–13

Rights & permissionsfor article A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF . Opens in a new window.
Research | 26 September 2016 | Open
Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer
- Chao Liu
- , Florian Rohart
- , Peter T. Simpson
- , Kum Kum Khanna
- , Mark A. Ragan
- & Kim-Anh Lê Cao
Scientific Reports 6 , 1–11

Rights & permissionsfor article Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer . Opens in a new window.
Research | 1 July 2016 | Open
Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer
Scientific Reports 6 , 1–12

Rights & permissionsfor article Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer . Opens in a new window.
Research | 30 September 2014 | Open
Inferring phylogenies of evolving sequences without multiple sequence alignment
Scientific Reports 4 , 1–9

Rights & permissionsfor article Inferring phylogenies of evolving sequences without multiple sequence alignment . Opens in a new window.
Reviews | 1 March 2010
Visualization of image data from cells to organisms
- Thomas Walter
- , David W Shattuck
- , Richard Baldock
- , Mark E Bastin
- , Anne E Carpenter
- , Suzanne Duce
- , Jan Ellenberg
- , Adam Fraser
- , Nicholas Hamilton
- , Steve Pieper
- , Mark A Ragan
- , Jurgen E Schneider
- , Pavel Tomancak
- & Jean-Karim Hériché
Nature Methods 7 , S26–S41

Rights & permissionsfor article Visualization of image data from cells to organisms . Opens in a new window.

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A genomic view of the reef-building coral Porites lutea and its microbial symbionts

Erratum: Visualization of image data from cells to organisms

Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

Microbial phylogenomics: Branching out

Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere

Identification of human haploinsufficient genes and their genomic proximity to segmental duplications

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

Deciphering the nature of the coral–Chromera association

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium

Palmitoylation: a protein S-acylation with implications for breast cancer

Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks

Crosstalk between sugarcane and a plant-growth promoting Burkholderia species

Exploring lateral genetic transfer among microbial genomes using TF-IDF

The metastasis suppressor RARRES3 as an endogenous inhibitor of the immunoproteasome expression in breast cancer cells

A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF

Integrating Multi-omics Data to Dissect Mechanisms of DNA repair Dysregulation in Breast Cancer

Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer

Inferring phylogenies of evolving sequences without multiple sequence alignment

Visualization of image data from cells to organisms

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