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1 November 1999
Magnitude and specificity of temporal gene expression during HIV-1 infection of a CD4+ T cell
- Jacques Corbeil
- , Dennis Sheeter
- , Steffney Rought
- , Pinyi Du
- , Mark Ferguson
- , Daniel R. Masys
- , John B. Welsh
- , David Huang
- , Jorg Drenkow
- , Douglas D. Richman
- & Thomas Gingeras
Nature Genetics 23 , 39–40

Rights & permissionsfor article Magnitude and specificity of temporal gene expression during HIV-1 infection of a CD4+ T cell . Opens in a new window.
Reviews | 29 July 2020 | Open
Perspectives on ENCODE
- Federico Abascal
- , Reyes Acosta
- , Nicholas J. Addleman
- , Jessika Adrian
- , Veena Afzal
- , Bronwen Aken
- , Jennifer A. Akiyama
- , Omar Al Jammal
- , Henry Amrhein
- , Stacie M. Anderson
- , Gregory R. Andrews
- , Igor Antoshechkin
- , Kristin G. Ardlie
- , Joel Armstrong
- , Matthew Astley
- , Budhaditya Banerjee
- , Amira A. Barkal
- , If H. A. Barnes
- , Iros Barozzi
- , Daniel Barrell
- , Gemma Barson
- , Daniel Bates
- , Ulugbek K. Baymuradov
- , Cassandra Bazile
- , Michael A. Beer
- , Samantha Beik
- , M. A. Bender
- , Ruth Bennett
- , Louis Philip Benoit Bouvrette
- , Bradley E. Bernstein
- , Andrew Berry
- , Anand Bhaskar
- , Alexandra Bignell
- , Steven M. Blue
- , David M. Bodine
- , Carles Boix
- , Nathan Boley
- , Tyler Borrman
- , Beatrice Borsari
- , Alan P. Boyle
- , Laurel A. Brandsmeier
- , Alessandra Breschi
- , Emery H. Bresnick
- , Jason A. Brooks
- , Michael Buckley
- , Christopher B. Burge
- , Rachel Byron
- , Eileen Cahill
- , Lingling Cai
- , Lulu Cao
- , Mark Carty
- , Rosa G. Castanon
- , Andres Castillo
- , Hassan Chaib
- , Esther T. Chan
- , Daniel R. Chee
- , Sora Chee
- , Hao Chen
- , Huaming Chen
- , Jia-Yu Chen
- , Songjie Chen
- , J. Michael Cherry
- , Surya B. Chhetri
- , Jyoti S. Choudhary
- , Jacqueline Chrast
- , Dongjun Chung
- , Declan Clarke
- , Neal A. L. Cody
- , Candice J. Coppola
- , Julie Coursen
- , Anthony M. D’Ippolito
- , Stephen Dalton
- , Cassidy Danyko
- , Claire Davidson
- , Jose Davila-Velderrain
- , Carrie A. Davis
- , Job Dekker
- , Alden Deran
- , Gilberto DeSalvo
- , Gloria Despacio-Reyes
- , Colin N. Dewey
- , Diane E. Dickel
- , Morgan Diegel
- , Mark Diekhans
- , Vishnu Dileep
- , Bo Ding
- , Sarah Djebali
- , Alexander Dobin
- , Daniel Dominguez
- , Sarah Donaldson
- , Jorg Drenkow
- , Timothy R. Dreszer
- , Yotam Drier
- , Michael O. Duff
- , Douglass Dunn
- , Catharine Eastman
- , Joseph R. Ecker
- , Matthew D. Edwards
- , Nicole El-Ali
- , Shaimae I. Elhajjajy
- , Keri Elkins
- , Andrew Emili
- , Charles B. Epstein
- , Rachel C. Evans
- , Iakes Ezkurdia
- , Kaili Fan
- , Peggy J. Farnham
- , Nina Farrell
- , Elise A. Feingold
- , Anne-Maud Ferreira
- , Katherine Fisher-Aylor
- , Stephen Fitzgerald
- , Paul Flicek
- , Chuan Sheng Foo
- , Kevin Fortier
- , Adam Frankish
- , Peter Freese
- , Shaliu Fu
- , Xiang-Dong Fu
- , Yu Fu
- , Yoko Fukuda-Yuzawa
- , Mariateresa Fulciniti
- , Alister P. W. Funnell
- , Idan Gabdank
- , Timur Galeev
- , Mingshi Gao
- , Carlos Garcia Giron
- , Tyler H. Garvin
- , Chelsea Anne Gelboin-Burkhart
- , Grigorios Georgolopoulos
- , Mark B. Gerstein
- , Belinda M. Giardine
- , David K. Gifford
- , David M. Gilbert
- , Daniel A. Gilchrist
- , Shawn Gillespie
- , Thomas R. Gingeras
- , Peng Gong
- , Alvaro Gonzalez
- , Jose M. Gonzalez
- , Peter Good
- , Alon Goren
- , David U. Gorkin
- , Brenton R. Graveley
- , Michael Gray
- , Jack F. Greenblatt
- , Ed Griffiths
- , Mark T. Groudine
- , Fabian Grubert
- , Mengting Gu
- , Roderic Guigó
- , Hongbo Guo
- , Yu Guo
- , Yuchun Guo
- , Gamze Gursoy
- , Maria Gutierrez-Arcelus
- , Jessica Halow
- , Ross C. Hardison
- , Matthew Hardy
- , Manoj Hariharan
- , Arif Harmanci
- , Anne Harrington
- , Jennifer L. Harrow
- , Tatsunori B. Hashimoto
- , Richard D. Hasz
- , Meital Hatan
- , Eric Haugen
- , James E. Hayes
- , Peng He
- , Yupeng He
- , Nastaran Heidari
- , David Hendrickson
- , Elisabeth F. Heuston
- , Jason A. Hilton
- , Benjamin C. Hitz
- , Abigail Hochman
- , Cory Holgren
- , Lei Hou
- , Shuyu Hou
- , Yun-Hua E. Hsiao
- , Shanna Hsu
- , Hui Huang
- , Tim J. Hubbard
- , Jack Huey
- , Timothy R. Hughes
- , Toby Hunt
- , Sean Ibarrientos
- , Robbyn Issner
- , Mineo Iwata
- , Osagie Izuogu
- , Tommi Jaakkola
- , Nader Jameel
- , Camden Jansen
- , Lixia Jiang
- , Peng Jiang
- , Audra Johnson
- , Rory Johnson
- , Irwin Jungreis
- , Madhura Kadaba
- , Maya Kasowski
- , Mary Kasparian
- , Momoe Kato
- , Rajinder Kaul
- , Trupti Kawli
- , Michael Kay
- , Judith C. Keen
- , Sunduz Keles
- , Cheryl A. Keller
- , David Kelley
- , Manolis Kellis
- , Pouya Kheradpour
- , Daniel Sunwook Kim
- , Anthony Kirilusha
- , Robert J. Klein
- , Birgit Knoechel
- , Samantha Kuan
- , Michael J. Kulik
- , Sushant Kumar
- , Anshul Kundaje
- , Tanya Kutyavin
- , Julien Lagarde
- , Bryan R. Lajoie
- , Nicole J. Lambert
- , John Lazar
- , Ah Young Lee
- , Donghoon Lee
- , Elizabeth Lee
- , Jin Wook Lee
- , Kristen Lee
- , Christina S. Leslie
- , Shawn Levy
- , Bin Li
- , Hairi Li
- , Nan Li
- , Xiangrui Li
- , Yang I. Li
- , Ying Li
- , Yining Li
- , Yue Li
- , Jin Lian
- , Maxwell W. Libbrecht
- , Shin Lin
- , Yiing Lin
- , Dianbo Liu
- , Jason Liu
- , Peng Liu
- , Tingting Liu
- , X. Shirley Liu
- , Yan Liu
- , Yaping Liu
- , Maria Long
- , Shaoke Lou
- , Jane Loveland
- , Aiping Lu
- , Yuheng Lu
- , Eric Lécuyer
- , Lijia Ma
- , Mark Mackiewicz
- , Brandon J. Mannion
- , Michael Mannstadt
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- , Fergal J. Martin
- , Eugenio Mattei
- , Kenneth McCue
- , Megan McEown
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- , Alex Meissner
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- , Christopher L. Messer
- , Wouter Meuleman
- , Clifford Meyer
- , Steve Miller
- , Matthew G. Milton
- , Tejaswini Mishra
- , Dianna E. Moore
- , Helen M. Moore
- , Jill E. Moore
- , Samuel H. Moore
- , Jennifer Moran
- , Ali Mortazavi
- , Jonathan M. Mudge
- , Nikhil Munshi
- , Rabi Murad
- , Richard M. Myers
- , Vivek Nandakumar
- , Preetha Nandi
- , Anil M. Narasimha
- , Aditi K. Narayanan
- , Hannah Naughton
- , Fabio C. P. Navarro
- , Patrick Navas
- , Jurijs Nazarovs
- , Jemma Nelson
- , Shane Neph
- , Fidencio Jun Neri
- , Joseph R. Nery
- , Amy R. Nesmith
- , J. Scott Newberry
- , Kimberly M. Newberry
- , Vu Ngo
- , Rosy Nguyen
- , Thai B. Nguyen
- , Tung Nguyen
- , Andrew Nishida
- , William S. Noble
- , Catherine S. Novak
- , Eva Maria Novoa
- , Briana Nuñez
- , Charles W. O’Donnell
- , Sara Olson
- , Kathrina C. Onate
- , Ericka Otterman
- , Hakan Ozadam
- , Michael Pagan
- , Tsultrim Palden
- , Xinghua Pan
- , Yongjin Park
- , E. Christopher Partridge
- , Benedict Paten
- , Florencia Pauli-Behn
- , Michael J. Pazin
- , Baikang Pei
- , Len A. Pennacchio
- , Alexander R. Perez
- , Emily H. Perry
- , Dmitri D. Pervouchine
- , Nishigandha N. Phalke
- , Quan Pham
- , Doug H. Phanstiel
- , Ingrid Plajzer-Frick
- , Gabriel A. Pratt
- , Henry E. Pratt
- , Sebastian Preissl
- , Jonathan K. Pritchard
- , Yuri Pritykin
- , Michael J. Purcaro
- , Qian Qin
- , Giovanni Quinones-Valdez
- , Ines Rabano
- , Ernest Radovani
- , Anil Raj
- , Nisha Rajagopal
- , Oren Ram
- , Lucia Ramirez
- , Ricardo N. Ramirez
- , Dylan Rausch
- , Soumya Raychaudhuri
- , Joseph Raymond
- , Rozita Razavi
- , Timothy E. Reddy
- , Thomas M. Reimonn
- , Bing Ren
- , Alexandre Reymond
- , Alex Reynolds
- , Suhn K. Rhie
- , John Rinn
- , Miguel Rivera
- , Juan Carlos Rivera-Mulia
- , Brian Roberts
- , Jose Manuel Rodriguez
- , Joel Rozowsky
- , Russell Ryan
- , Eric Rynes
- , Denis N. Salins
- , Richard Sandstrom
- , Takayo Sasaki
- , Shashank Sathe
- , Daniel Savic
- , Alexandra Scavelli
- , Jonathan Scheiman
- , Christoph Schlaffner
- , Jeffery A. Schloss
- , Frank W. Schmitges
- , Lei Hoon See
- , Anurag Sethi
- , Manu Setty
- , Anthony Shafer
- , Shuo Shan
- , Eilon Sharon
- , Quan Shen
- , Yin Shen
- , Richard I. Sherwood
- , Minyi Shi
- , Sunyoung Shin
- , Noam Shoresh
- , Kyle Siebenthall
- , Cristina Sisu
- , Teri Slifer
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- , Damek V. Spacek
- , Sharanya Srinivasan
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- , Jeff Vierstra
- , Axel Visel
- , Anna Vlasova
- , Christopher M. Vockley
- , Simona Volpi
- , Shinny Vong
- , Hao Wang
- , Mengchi Wang
- , Qin Wang
- , Ruth Wang
- , Tao Wang
- , Wei Wang
- , Xiaofeng Wang
- , Yanli Wang
- , Nathaniel K. Watson
- , Xintao Wei
- , Zhijie Wei
- , Hendrik Weisser
- , Sherman M. Weissman
- , Rene Welch
- , Robert E. Welikson
- , Zhiping Weng
- , Harm-Jan Westra
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- , Collin White
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- , Andre Wildberg
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- , Jialing Zhang
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- , Kai Zhang
- , Lijun Zhang
- , Peng Zhang
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- , Xiao-Ou Zhang
- , Yanxiao Zhang
- , Zhizhuo Zhang
- , Yuan Zhao
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- , Guoqing Zhong
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- & Richard M. Myers
Nature 583 , 693–698

Rights & permissionsfor article Perspectives on ENCODE . Opens in a new window.
Research | 25 May 2008
Efficient targeted transcript discovery via array-based normalization of RACE libraries
- Sarah Djebali
- , Philipp Kapranov
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Nature Methods 5 , 629–635

Rights & permissionsfor article Efficient targeted transcript discovery via array-based normalization of RACE libraries . Opens in a new window.
Research | 13 January 2015 | Open
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- Dmitri D. Pervouchine
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Nature Communications 6 , 1–11

Rights & permissionsfor article Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression . Opens in a new window.
Research | 19 November 2014 | Open
A comparative encyclopedia of DNA elements in the mouse genome
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- & Bing Ren
Nature 515 , 355–364

Rights & permissionsfor article A comparative encyclopedia of DNA elements in the mouse genome . Opens in a new window.
Research | 27 August 2014 | Open
Comparative analysis of the transcriptome across distant species
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Nature 512 , 445–448

Rights & permissionsfor article Comparative analysis of the transcriptome across distant species . Opens in a new window.
Research | 5 September 2012 | Open
Landscape of transcription in human cells
- Sarah Djebali
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- , Barbara Wold
- , Piero Carninci
- , Roderic Guigó
- & Thomas R. Gingeras
Nature 489 , 101–108

Rights & permissionsfor article Landscape of transcription in human cells . Opens in a new window.
Research | 5 September 2012 | Open
An integrated encyclopedia of DNA elements in the human genome
- Ian Dunham
- , Anshul Kundaje
- , Shelley F. Aldred
- , Patrick J. Collins
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Rights & permissionsfor article An integrated encyclopedia of DNA elements in the human genome . Opens in a new window.
Research | 14 June 2007
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
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