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Amendments and Corrections | 21 December 2020 | Open
Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology
- Antonio Molinaro
- , Pierre Bel Lassen
- , Marcus Henricsson
- , Hao Wu
- , Solia Adriouch
- , Eugeni Belda
- , Rima Chakaroun
- , Trine Nielsen
- , Per-Olof Bergh
- , Christine Rouault
- , Sébastien André
- , Florian Marquet
- , Fabrizio Andreelli
- , Joe-Elie Salem
- , Karen Assmann
- , Jean-Philippe Bastard
- , Sofia Forslund
- , Emmanuelle Le Chatelier
- , Gwen Falony
- , Nicolas Pons
- , Edi Prifti
- , Benoit Quinquis
- , Hugo Roume
- , Sara Vieira-Silva
- , Tue H. Hansen
- , Helle Krogh Pedersen
- , Christian Lewinter
- , Nadja B. Sønderskov
- , Renato Alves
- , Chloe Amouyal
- , Ehm Astrid Andersson Galijatovic
- , Olivier Barthelemy
- , Jean-Paul Batisse
- , Magalie Berland
- , Randa Bittar
- , Hervé Blottière
- , Frederic Bosquet
- , Rachid Boubrit
- , Olivier Bourron
- , Mickael Camus
- , Dominique Cassuto
- , Julien Chilloux
- , Cecile Ciangura
- , Luis Pedro Coelho
- , Jean-Philippe Collet
- , Maria-Carlota Dao
- , Morad Djebbar
- , Angélique Doré
- , Line Engelbrechtsen
- , Soraya Fellahi
- , Leopold Fezeu
- , Sebastien Fromentin
- , Philippe Giral
- , Jens Peter Gøtze
- , Agnes Hartemann
- , Jens Juul Holst
- , Serge Hercberg
- , Gerard Helft
- , Malene Hornbak
- , Jean-Sebastien Hulot
- , Richard Isnard
- , Sophie Jaqueminet
- , Niklas Rye Jørgensen
- , Hanna Julienne
- , Johanne Justesen
- , Judith Kammer
- , Nikolaj Krarup
- , Mathieu Kerneis
- , Jean Khemis
- , Nadja Buus Kristensen
- , Michael Kuhn
- , Véronique Lejard
- , Florence Levenez
- , Lea Lucas-Martini
- , Robin Massey
- , Nicolas Maziers
- , Jonathan Medina-Stamminger
- , Gilles Montalescot
- , Sandrine Moutel
- , Laetitia Pasero Le Pavin
- , Christine Poitou
- , Francoise Pousset
- , Laurence Pouzoulet
- , Sebastien Schmidt
- , Lucas Moitinho-Silva
- , Johanne Silvain
- , Nataliya Sokolovska
- , Sothea Touch
- , Mathilde Svendstrup
- , Timothy Swartz
- , Thierry Vanduyvenboden
- , Camille Vatier
- , Stefanie Walther
- , Lars Køber
- , Henrik Vestergaard
- , Torben Hansen
- , Jean-Daniel Zucker
- , Pilar Galan
- , Marc-Emmanuel Dumas
- , Jeroen Raes
- , Jean-Michel Oppert
- , Ivica Letunic
- , Jens Nielsen
- , Peer Bork
- , S. Dusko Ehrlich
- , Michael Stumvoll
- , Oluf Pedersen
- , Judith Aron-Wisnewsky
- , Karine Clément
- & Fredrik Bäckhed
Nature Communications 11 , 1–1

Rights & permissionsfor article Author Correction: Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology . Opens in a new window.
Research | 8 January 2021 | Open
Bayesian genome scale modelling identifies thermal determinants of yeast metabolism
- Gang Li
- , Yating Hu
- , Jan Zrimec
- , Hao Luo
- , Hao Wang
- , Aleksej Zelezniak
- , Boyang Ji
- & Jens Nielsen
Nature Communications 12 , 1–12

Rights & permissionsfor article Bayesian genome scale modelling identifies thermal determinants of yeast metabolism . Opens in a new window.
Research | 4 January 2021
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
- Sonja Blasche
- , Yongkyu Kim
- , Ruben A. T. Mars
- , Daniel Machado
- , Maria Maansson
- , Eleni Kafkia
- , Alessio Milanese
- , Georg Zeller
- , Bas Teusink
- , Jens Nielsen
- , Vladimir Benes
- , Rute Neves
- , Uwe Sauer
- & Kiran Raosaheb Patil
Nature Microbiology 6 , 196–208

Rights & permissionsfor article Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community . Opens in a new window.
Amendments and Corrections | 22 October 2020 | Open
Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu
- , Feiran Li
- , Benjamín J. Sánchez
- , Zhengming Zhu
- , Gang Li
- , Iván Domenzain
- , Simonas Marcišauskas
- , Petre Mihail Anton
- , Dimitra Lappa
- , Christian Lieven
- , Moritz Emanuel Beber
- , Nikolaus Sonnenschein
- , Eduard J. Kerkhoven
- & Jens Nielsen
Nature Communications 11 , 1–1

Rights & permissionsfor article Author Correction: A consensus <i>S. cerevisiae</i> metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism . Opens in a new window.
Research | 3 December 2020 | Open
Pathway engineering in yeast for synthesizing the complex polyketide bikaverin
- Meng Zhao
- , Yu Zhao
- , Mingdong Yao
- , Hala Iqbal
- , Qi Hu
- , Hong Liu
- , Bin Qiao
- , Chun Li
- , Christine A. S. Skovbjerg
- , Jens Christian Nielsen
- , Jens Nielsen
- , Rasmus J. N. Frandsen
- , Yingjin Yuan
- & Jef D. Boeke
Nature Communications 11 , 1–10

Rights & permissionsfor article Pathway engineering in yeast for synthesizing the complex polyketide bikaverin . Opens in a new window.
Research | 1 December 2020 | Open
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
- Jan Zrimec
- , Christoph S. Börlin
- , Filip Buric
- , Azam Sheikh Muhammad
- , Rhongzen Chen
- , Verena Siewers
- , Vilhelm Verendel
- , Jens Nielsen
- , Mats Töpel
- & Aleksej Zelezniak
Nature Communications 11 , 1–16

Rights & permissionsfor article Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure . Opens in a new window.
Research | 18 November 2020 | Open
Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology
- Antonio Molinaro
- , Pierre Bel Lassen
- , Marcus Henricsson
- , Hao Wu
- , Solia Adriouch
- , Eugeni Belda
- , Rima Chakaroun
- , Trine Nielsen
- , Per-Olof Bergh
- , Christine Rouault
- , Sébastien André
- , Florian Marquet
- , Fabrizio Andreelli
- , Joe-Elie Salem
- , Karen Assmann
- , Jean-Philippe Bastard
- , Sofia Forslund
- , Emmanuelle Le Chatelier
- , Gwen Falony
- , Nicolas Pons
- , Edi Prifti
- , Benoit Quinquis
- , Hugo Roume
- , Sara Vieira-Silva
- , Tue H. Hansen
- , Helle Krogh Pedersen
- , Christian Lewinter
- , Nadja B. Sønderskov
- , Renato Alves
- , Chloe Amouyal
- , Ehm Astrid Andersson Galijatovic
- , Olivier Barthelemy
- , Jean-Paul Batisse
- , Magalie Berland
- , Randa Bittar
- , Hervé Blottière
- , Frederic Bosquet
- , Rachid Boubrit
- , Olivier Bourron
- , Mickael Camus
- , Dominique Cassuto
- , Julien Chilloux
- , Cecile Ciangura
- , Luis Pedro Coelho
- , Jean-Philippe Collet
- , Maria-Carlota Dao
- , Morad Djebbar
- , Angélique Doré
- , Line Engelbrechtsen
- , Soraya Fellahi
- , Leopold Fezeu
- , Sebastien Fromentin
- , Philippe Giral
- , Jens Peter Gøtze
- , Agnes Hartemann
- , Jens Juul Holst
- , Serge Hercberg
- , Gerard Helft
- , Malene Hornbak
- , Jean-Sebastien Hulot
- , Richard Isnard
- , Sophie Jaqueminet
- , Niklas Rye Jørgensen
- , Hanna Julienne
- , Johanne Justesen
- , Judith Kammer
- , Nikolaj Krarup
- , Mathieu Kerneis
- , Jean Khemis
- , Nadja Buus Kristensen
- , Michael Kuhn
- , Véronique Lejard
- , Florence Levenez
- , Lea Lucas-Martini
- , Robin Massey
- , Nicolas Maziers
- , Jonathan Medina-Stamminger
- , Gilles Montalescot
- , Sandrine Moutel
- , Laetitia Pasero Le Pavin
- , Christine Poitou
- , Francoise Pousset
- , Laurence Pouzoulet
- , Sebastien Schmidt
- , Lucas Moitinho-Silva
- , Johanne Silvain
- , Nataliya Sokolovska
- , Sothea Touch
- , Mathilde Svendstrup
- , Timothy Swartz
- , Thierry Vanduyvenboden
- , Camille Vatier
- , Stefanie Walther
- , Lars Køber
- , Henrik Vestergaard
- , Torben Hansen
- , Jean-Daniel Zucker
- , Pilar Galan
- , Marc-Emmanuel Dumas
- , Jeroen Raes
- , Jean-Michel Oppert
- , Ivica Letunic
- , Jens Nielsen
- , Peer Bork
- , S. Dusko Ehrlich
- , Michael Stumvoll
- , Oluf Pedersen
- , Judith Aron-Wisnewsky
- , Karine Clément
- & Fredrik Bäckhed
Nature Communications 11 , 1–10

Rights & permissionsfor article Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology . Opens in a new window.
Research | 4 November 2020 | Open
Evolution from adherent to suspension: systems biology of HEK293 cell line development
- Magdalena Malm
- , Rasool Saghaleyni
- , Magnus Lundqvist
- , Marco Giudici
- , Veronique Chotteau
- , Ray Field
- , Paul G. Varley
- , Diane Hatton
- , Luigi Grassi
- , Thomas Svensson
- , Jens Nielsen
- & Johan Rockberg
Scientific Reports 10 , 1–15

Rights & permissionsfor article Evolution from adherent to suspension: systems biology of HEK293 cell line development . Opens in a new window.
Research | 25 September 2020 | Open
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
- Jie Zhang
- , Søren D. Petersen
- , Tijana Radivojevic
- , Andrés Ramirez
- , Andrés Pérez-Manríquez
- , Eduardo Abeliuk
- , Benjamín J. Sánchez
- , Zak Costello
- , Yu Chen
- , Michael J. Fero
- , Hector Garcia Martin
- , Jens Nielsen
- , Jay D. Keasling
- & Michael K. Jensen
Nature Communications 11 , 1–13

Rights & permissionsfor article Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism . Opens in a new window.
Amendments and Corrections | 13 July 2018 | Open
Correction: Author Correction: Metabolic engineering of Saccharomyces cerevisiae for production of very long chain fatty acid-derived chemicals
- Tao Yu
- , Yongjin J. Zhou
- , Leonie Wenning
- , Quanli Liu
- , Anastasia Krivoruchko
- , Verena Siewers
- , Jens Nielsen
- & Florian David
Nature Communications 9 , 1–1

Rights & permissionsfor article Correction: Author Correction: Metabolic engineering of <i>Saccharomyces cerevisiae</i> for production of very long chain fatty acid-derived chemicals . Opens in a new window.
Research | 11 September 2020 | Open
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals
- Stefania Vaga
- , Sunjae Lee
- , Boyang Ji
- , Anna Andreasson
- , Nicholas J. Talley
- , Lars Agréus
- , Gholamreza Bidkhori
- , Petia Kovatcheva-Datchary
- , Junseok Park
- , Doheon Lee
- , Gordon Proctor
- , Stanislav Dusko Ehrlich
- , Jens Nielsen
- , Lars Engstrand
- & Saeed Shoaie
Scientific Reports 10 , 1–12

Rights & permissionsfor article Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals . Opens in a new window.
Correspondence | 2 March 2020 | Open
MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven
- , Moritz E. Beber
- , Brett G. Olivier
- , Frank T. Bergmann
- , Meric Ataman
- , Parizad Babaei
- , Jennifer A. Bartell
- , Lars M. Blank
- , Siddharth Chauhan
- , Kevin Correia
- , Christian Diener
- , Andreas Dräger
- , Birgitta E. Ebert
- , Janaka N. Edirisinghe
- , José P. Faria
- , Adam M. Feist
- , Georgios Fengos
- , Ronan M. T. Fleming
- , Beatriz García-Jiménez
- , Vassily Hatzimanikatis
- , Wout van Helvoirt
- , Christopher S. Henry
- , Henning Hermjakob
- , Markus J. Herrgård
- , Ali Kaafarani
- , Hyun Uk Kim
- , Zachary King
- , Steffen Klamt
- , Edda Klipp
- , Jasper J. Koehorst
- , Matthias König
- , Meiyappan Lakshmanan
- , Dong-Yup Lee
- , Sang Yup Lee
- , Sunjae Lee
- , Nathan E. Lewis
- , Filipe Liu
- , Hongwu Ma
- , Daniel Machado
- , Radhakrishnan Mahadevan
- , Paulo Maia
- , Adil Mardinoglu
- , Gregory L. Medlock
- , Jonathan M. Monk
- , Jens Nielsen
- , Lars Keld Nielsen
- , Juan Nogales
- , Intawat Nookaew
- , Bernhard O. Palsson
- , Jason A. Papin
- , Kiran R. Patil
- , Mark Poolman
- , Nathan D. Price
- , Osbaldo Resendis-Antonio
- , Anne Richelle
- , Isabel Rocha
- , Benjamín J. Sánchez
- , Peter J. Schaap
- , Rahuman S. Malik Sheriff
- , Saeed Shoaie
- , Nikolaus Sonnenschein
- , Bas Teusink
- , Paulo Vilaça
- , Jon Olav Vik
- , Judith A. H. Wodke
- , Joana C. Xavier
- , Qianqian Yuan
- , Maksim Zakhartsev
- & Cheng Zhang
Nature Biotechnology 38 , 272–276

Rights & permissionsfor article MEMOTE for standardized genome-scale metabolic model testing . Opens in a new window.
Amendments and Corrections | 19 March 2020 | Open
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
- Christian Lieven
- , Moritz E. Beber
- , Brett G. Olivier
- , Frank T. Bergmann
- , Meric Ataman
- , Parizad Babaei
- , Jennifer A. Bartell
- , Lars M. Blank
- , Siddharth Chauhan
- , Kevin Correia
- , Christian Diener
- , Andreas Dräger
- , Birgitta E. Ebert
- , Janaka N. Edirisinghe
- , José P. Faria
- , Adam M. Feist
- , Georgios Fengos
- , Ronan M. T. Fleming
- , Beatriz García-Jiménez
- , Vassily Hatzimanikatis
- , Wout van Helvoirt
- , Christopher S. Henry
- , Henning Hermjakob
- , Markus J. Herrgård
- , Ali Kaafarani
- , Hyun Uk Kim
- , Zachary King
- , Steffen Klamt
- , Edda Klipp
- , Jasper J. Koehorst
- , Matthias König
- , Meiyappan Lakshmanan
- , Dong-Yup Lee
- , Sang Yup Lee
- , Sunjae Lee
- , Nathan E. Lewis
- , Filipe Liu
- , Hongwu Ma
- , Daniel Machado
- , Radhakrishnan Mahadevan
- , Paulo Maia
- , Adil Mardinoglu
- , Gregory L. Medlock
- , Jonathan M. Monk
- , Jens Nielsen
- , Lars Keld Nielsen
- , Juan Nogales
- , Intawat Nookaew
- , Bernhard O. Palsson
- , Jason A. Papin
- , Kiran R. Patil
- , Mark Poolman
- , Nathan D. Price
- , Osbaldo Resendis-Antonio
- , Anne Richelle
- , Isabel Rocha
- , Benjamín J. Sánchez
- , Peter J. Schaap
- , Rahuman S. Malik Sheriff
- , Saeed Shoaie
- , Nikolaus Sonnenschein
- , Bas Teusink
- , Paulo Vilaça
- , Jon Olav Vik
- , Judith A. H. Wodke
- , Joana C. Xavier
- , Qianqian Yuan
- , Maksim Zakhartsev
- & Cheng Zhang
Nature Biotechnology 38 , 504–504

Rights & permissionsfor article Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing . Opens in a new window.
News and Views | 31 July 2019
Yeast cells handle stress by reprogramming their metabolism
- Jens Nielsen
Nature 572 , 184–185

Rights & permissionsfor article Yeast cells handle stress by reprogramming their metabolism . Opens in a new window.
Research | 5 March 2019 | Open
A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in Saccharomyces cerevisiae
- Yueping Zhang
- , Juan Wang
- , Zibai Wang
- , Yiming Zhang
- , Shuobo Shi
- , Jens Nielsen
- & Zihe Liu
Nature Communications 10 , 1–10

Rights & permissionsfor article A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in <i>Saccharomyces cerevisiae</i> . Opens in a new window.
Research | 6 May 2020
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis
- Sara Vieira-Silva
- , Gwen Falony
- , Eugeni Belda
- , Trine Nielsen
- , Judith Aron-Wisnewsky
- , Rima Chakaroun
- , Sofia K. Forslund
- , Karen Assmann
- , Mireia Valles-Colomer
- , Thi Thuy Duyen Nguyen
- , Sebastian Proost
- , Edi Prifti
- , Valentina Tremaroli
- , Nicolas Pons
- , Emmanuelle Le Chatelier
- , Fabrizio Andreelli
- , Jean-Phillippe Bastard
- , Luis Pedro Coelho
- , Nathalie Galleron
- , Tue H. Hansen
- , Jean-Sébastien Hulot
- , Christian Lewinter
- , Helle K. Pedersen
- , Benoit Quinquis
- , Christine Rouault
- , Hugo Roume
- , Joe-Elie Salem
- , Nadja B. Søndertoft
- , Sothea Touch
- , Renato Alves
- , Chloe Amouyal
- , Ehm Astrid Andersson Galijatovic
- , Olivier Barthelemy
- , Jean-Paul Batisse
- , Magalie Berland
- , Randa Bittar
- , Hervé Blottière
- , Frederic Bosquet
- , Rachid Boubrit
- , Olivier Bourron
- , Mickael Camus
- , Dominique Cassuto
- , Cecile Ciangura
- , Jean-Philippe Collet
- , Maria-Carlota Dao
- , Jean Debedat
- , Morad Djebbar
- , Angélique Doré
- , Line Engelbrechtsen
- , Soraya Fellahi
- , Sebastien Fromentin
- , Philippe Giral
- , Marianne Graine
- , Agnes Hartemann
- , Bolette Hartmann
- , Gerard Helft
- , Serge Hercberg
- , Malene Hornbak
- , Richard Isnard
- , Sophie Jaqueminet
- , Niklas Rye Jørgensen
- , Hanna Julienne
- , Johanne Justesen
- , Judith Kammer
- , Mathieu Kerneis
- , Jean Khemis
- , Nikolaj Krarup
- , Michael Kuhn
- , Aurélie Lampuré
- , Véronique Lejard
- , Florence Levenez
- , Lea Lucas-Martini
- , Robin Massey
- , Nicolas Maziers
- , Jonathan Medina-Stamminger
- , Lucas Moitinho-Silva
- , Gilles Montalescot
- , Sandrine Moutel
- , Laetitia Pasero Le Pavin
- , Christine Poitou-Bernert
- , Francoise Pousset
- , Laurence Pouzoulet
- , Sebastian Schmidt
- , Johanne Silvain
- , Mathilde Svendstrup
- , Timothy Swartz
- , Thierry Vanduyvenboden
- , Camille Vatier
- , Eric Verger
- , Stefanie Walther
- , Marc-Emmanuel Dumas
- , Stanislav Dusko Ehrlich
- , Pilar Galan
- , Jens P. Gøtze
- , Torben Hansen
- , Jens J. Holst
- , Lars Køber
- , Ivica Letunic
- , Jens Nielsen
- , Jean-Michel Oppert
- , Michael Stumvoll
- , Henrik Vestergaard
- , Jean-Daniel Zucker
- , Peer Bork
- , Oluf Pedersen
- , Fredrik Bäckhed
- , Karine Clément
- & Jeroen Raes
Nature 581 , 310–315

Rights & permissionsfor article Statin therapy is associated with lower prevalence of gut microbiota dysbiosis . Opens in a new window.
Correspondence | 6 August 2018
Challenges in modeling the human gut microbiome
- Parizad Babaei
- , Saeed Shoaie
- , Boyang Ji
- & Jens Nielsen
Nature Biotechnology 36 , 682–686

Rights & permissionsfor article Challenges in modeling the human gut microbiome . Opens in a new window.
Research | 20 April 2020 | Open
Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast
- Rosemary Yu
- , Kate Campbell
- , Rui Pereira
- , Johan Björkeroth
- , Qi Qi
- , Egor Vorontsov
- , Carina Sihlbom
- & Jens Nielsen
Nature Communications 11 , 1–12

Rights & permissionsfor article Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast . Opens in a new window.
Research | 1 May 2020 | Open
Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts
- Tyler W. Doughty
- , Iván Domenzain
- , Aaron Millan-Oropeza
- , Noemi Montini
- , Philip A. de Groot
- , Rui Pereira
- , Jens Nielsen
- , Céline Henry
- , Jean-Marc G. Daran
- , Verena Siewers
- & John P. Morrissey
Nature Communications 11 , 1–9

Rights & permissionsfor article Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts . Opens in a new window.
Research | 14 July 2017 | Open
Selection of complementary foods based on optimal nutritional values
Scientific Reports 7 , 1–9

Rights & permissionsfor article Selection of complementary foods based on optimal nutritional values . Opens in a new window.
News and Views | 27 June 2017
Metabolism: Built on stable catalysts
- Jens Nielsen
Nature Microbiology 2 , 1–2

Rights & permissionsfor article Metabolism: Built on stable catalysts . Opens in a new window.
Research | 3 March 2016 | Open
Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica
npj Systems Biology and Applications 2 , 1–7

Rights & permissionsfor article Regulation of amino-acid metabolism controls flux to lipid accumulation in <i>Yarrowia lipolytica</i> . Opens in a new window.
Research | 27 May 2016 | Open
Thermotolerant yeasts selected by adaptive evolution express heat stress response at 30 °C
- Luis Caspeta
- , Yun Chen
- & Jens Nielsen
Scientific Reports 6 , 1–9

Rights & permissionsfor article Thermotolerant yeasts selected by adaptive evolution express heat stress response at 30 °C . Opens in a new window.
Research | 11 November 2016 | Open
Engineering yeast for high-level production of stilbenoid antioxidants
Scientific Reports 6 , 1–8

Rights & permissionsfor article Engineering yeast for high-level production of stilbenoid antioxidants . Opens in a new window.
Research | 20 February 2017
Expanding the product portfolio of fungal type I fatty acid synthases
Nature Chemical Biology 13 , 360–362

Rights & permissionsfor article Expanding the product portfolio of fungal type I fatty acid synthases . Opens in a new window.
Reviews | 18 March 2020
Third-generation biorefineries as the means to produce fuels and chemicals from CO₂
- Zihe Liu
- , Kai Wang
- , Yun Chen
- , Tianwei Tan
- & Jens Nielsen
Nature Catalysis 3 , 274–288

Rights & permissionsfor article Third-generation biorefineries as the means to produce fuels and chemicals from CO<sub>2</sub> . Opens in a new window.
Research | 29 May 2013
Gut metagenome in European women with normal, impaired and diabetic glucose control
Nature 498 , 99–103

Rights & permissionsfor article Gut metagenome in European women with normal, impaired and diabetic glucose control . Opens in a new window.
Correspondence | 6 March 2015
How to set up collaborations between academia and industrial biotech companies
- Jack T Pronk
- , Sang Yup Lee
- , Jeff Lievense
- , John Pierce
- , Bernhard Palsson
- , Mathias Uhlen
- & Jens Nielsen
Nature Biotechnology 33 , 237–240

Rights & permissionsfor article How to set up collaborations between academia and industrial biotech companies . Opens in a new window.
Research | 28 August 2013 | Open
Understanding the interactions between bacteria in the human gut through metabolic modeling
- Saeed Shoaie
- , Fredrik Karlsson
- , Adil Mardinoglu
- , Intawat Nookaew
- , Sergio Bordel
- & Jens Nielsen
Scientific Reports 3 , 1–10

Rights & permissionsfor article Understanding the interactions between bacteria in the human gut through metabolic modeling . Opens in a new window.
17 April 2014
Engineering synergy in biotechnology
- Jens Nielsen
- , Martin Fussenegger
- , Jay Keasling
- , Sang Yup Lee
- , James C Liao
- , Kristala Prather
- & Bernhard Palsson
Nature Chemical Biology 10 , 319–322

Rights & permissionsfor article Engineering synergy in biotechnology . Opens in a new window.
Correspondence | 10 September 2013
Economic and environmental impacts of microbial biodiesel
- Luis Caspeta
- & Jens Nielsen
Nature Biotechnology 31 , 789–793

Rights & permissionsfor article Economic and environmental impacts of microbial biodiesel . Opens in a new window.
Research | 20 January 2020
Multidimensional engineering of Saccharomyces cerevisiae for efficient synthesis of medium-chain fatty acids
- Zhiwei Zhu
- , Yating Hu
- , Paulo Gonçalves Teixeira
- , Rui Pereira
- , Yun Chen
- , Verena Siewers
- & Jens Nielsen
Nature Catalysis 3 , 64–74

Rights & permissionsfor article Multidimensional engineering of <i>Saccharomyces cerevisiae</i> for efficient synthesis of medium-chain fatty acids . Opens in a new window.
Research | 1 December 2000
Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network
Nature Biotechnology 18 , 1283–1286

Rights & permissionsfor article Increasing galactose consumption by <i>Saccharomyces cerevisiae</i> through metabolic engineering of the <i>GAL</i> gene regulatory network . Opens in a new window.
Correspondence | 1 August 2011
Synergies between synthetic biology and metabolic engineering
- Jens Nielsen
- & Jay D Keasling
Nature Biotechnology 29 , 693–695

Rights & permissionsfor article Synergies between synthetic biology and metabolic engineering . Opens in a new window.
News and Views | 18 March 2011
Chimeric synthetic pathways
- Jens Nielsen
Nature Chemical Biology 7 , 195–196

Rights & permissionsfor article Chimeric synthetic pathways . Opens in a new window.
Research | 16 December 2019
Engineering yeast phospholipid metabolism for de novo oleoylethanolamide production
- Yi Liu
- , Quanli Liu
- , Anastasia Krivoruchko
- , Sakda Khoomrung
- & Jens Nielsen
Nature Chemical Biology 16 , 197–205

Rights & permissionsfor article Engineering yeast phospholipid metabolism for de novo oleoylethanolamide production . Opens in a new window.
Research | 2 January 2020 | Open
Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion
- Jahir M. Gutierrez
- , Amir Feizi
- , Shangzhong Li
- , Thomas B. Kallehauge
- , Hooman Hefzi
- , Lise M. Grav
- , Daniel Ley
- , Deniz Baycin Hizal
- , Michael J. Betenbaugh
- , Bjorn Voldborg
- , Helene Faustrup Kildegaard
- , Gyun Min Lee
- , Bernhard O. Palsson
- , Jens Nielsen
- & Nathan E. Lewis
Nature Communications 11 , 1–10

Rights & permissionsfor article Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion . Opens in a new window.
Research | 31 October 2019 | Open
Rewiring carbon metabolism in yeast for high level production of aromatic chemicals
- Quanli Liu
- , Tao Yu
- , Xiaowei Li
- , Yu Chen
- , Kate Campbell
- , Jens Nielsen
- & Yun Chen
Nature Communications 10 , 1–13

Rights & permissionsfor article Rewiring carbon metabolism in yeast for high level production of aromatic chemicals . Opens in a new window.
Research | 7 November 2019 | Open
Complex I is bypassed during high intensity exercise
Nature Communications 10 , 1–11

Rights & permissionsfor article Complex I is bypassed during high intensity exercise . Opens in a new window.
Research | 8 August 2019 | Open
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
- Hongzhong Lu
- , Feiran Li
- , Benjamín J. Sánchez
- , Zhengming Zhu
- , Gang Li
- , Iván Domenzain
- , Simonas Marcišauskas
- , Petre Mihail Anton
- , Dimitra Lappa
- , Christian Lieven
- , Moritz Emanuel Beber
- , Nikolaus Sonnenschein
- , Eduard J. Kerkhoven
- & Jens Nielsen
Nature Communications 10 , 1–13

Rights & permissionsfor article A consensus <i>S. cerevisiae</i> metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism . Opens in a new window.
Reviews | 23 July 2019
Modelling approaches for studying the microbiome
- Manish Kumar
- , Boyang Ji
- , Karsten Zengler
- & Jens Nielsen
Nature Microbiology 4 , 1253–1267

Rights & permissionsfor article Modelling approaches for studying the microbiome . Opens in a new window.
Research | 3 August 2018 | Open
Global rewiring of cellular metabolism renders Saccharomyces cerevisiae Crabtree negative
- Zongjie Dai
- , Mingtao Huang
- , Yun Chen
- , Verena Siewers
- & Jens Nielsen
Nature Communications 9 , 1–8

Rights & permissionsfor article Global rewiring of cellular metabolism renders <i>Saccharomyces cerevisiae</i> Crabtree negative . Opens in a new window.
Reviews | 30 July 2018
Barriers and opportunities in bio-based production of hydrocarbons
Nature Energy 3 , 925–935

Rights & permissionsfor article Barriers and opportunities in bio-based production of hydrocarbons . Opens in a new window.
Reviews | 23 April 2018
Systems biology in hepatology: approaches and applications
- Adil Mardinoglu
- , Jan Boren
- , Ulf Smith
- , Mathias Uhlen
- & Jens Nielsen
Nature Reviews Gastroenterology & Hepatology 15 , 365–377

Rights & permissionsfor article Systems biology in hepatology: approaches and applications . Opens in a new window.
Research | 19 February 2018
Recon3D enables a three-dimensional view of gene variation in human metabolism
- Elizabeth Brunk
- , Swagatika Sahoo
- , Daniel C Zielinski
- , Ali Altunkaya
- , Andreas Dräger
- , Nathan Mih
- , Francesco Gatto
- , Avlant Nilsson
- , German Andres Preciat Gonzalez
- , Maike Kathrin Aurich
- , Andreas Prlić
- , Anand Sastry
- , Anna D Danielsdottir
- , Almut Heinken
- , Alberto Noronha
- , Peter W Rose
- , Stephen K Burley
- , Ronan M T Fleming
- , Jens Nielsen
- , Ines Thiele
- & Bernhard O Palsson
Nature Biotechnology 36 , 272–281

Rights & permissionsfor article Recon3D enables a three-dimensional view of gene variation in human metabolism . Opens in a new window.
Research | 18 August 2017 | Open
Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome
- ...research team led by Prof. Jens Nielsen at the Chalmers University of...
- Amir Feizi
- , Francesco Gatto
- , Mathias Uhlen
- & Jens Nielsen
npj Systems Biology and Applications 3 , 1–9

Rights & permissionsfor article Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome . Opens in a new window.
Research | 26 May 2017 | Open
Metabolic engineering of Saccharomyces cerevisiae for production of very long chain fatty acid-derived chemicals
- Tao Yu
- , Yongjin J. Zhou
- , Leonie Wenning
- , Quanli Liu
- , Anastasia Krivoruchko
- , Verena Siewers
- , Jens Nielsen
- & Florian David
Nature Communications 8 , 1–11

Rights & permissionsfor article Metabolic engineering of <i>Saccharomyces cerevisiae</i> for production of very long chain fatty acid-derived chemicals . Opens in a new window.
Research | 25 October 2017 | Open
Efficient protein production by yeast requires global tuning of metabolism
Nature Communications 8 , 1–12

Rights & permissionsfor article Efficient protein production by yeast requires global tuning of metabolism . Opens in a new window.
Research | 1 March 2016 | Open
Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase
- Avlant Nilsson
- & Jens Nielsen
Scientific Reports 6 , 1–11

Rights & permissionsfor article Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase . Opens in a new window.
Research | 14 October 2016 | Open
Penicillium arizonense, a new, genome sequenced fungal species, reveals a high chemical diversity in secreted metabolites
Scientific Reports 6 , 1–13

Rights & permissionsfor article <i>Penicillium arizonense</i>, a new, genome sequenced fungal species, reveals a high chemical diversity in secreted metabolites . Opens in a new window.

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