Showing 1–16 of 16 results
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Research |
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Amendments and Corrections |
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
- Andrew Maltez Thomas
- , Paolo Manghi
- , Francesco Asnicar
- , Edoardo Pasolli
- , Federica Armanini
- , Moreno Zolfo
- , Francesco Beghini
- , Serena Manara
- , Nicolai Karcher
- , Chiara Pozzi
- , Sara Gandini
- , Davide Serrano
- , Sonia Tarallo
- , Antonio Francavilla
- , Gaetano Gallo
- , Mario Trompetto
- , Giulio Ferrero
- , Sayaka Mizutani
- , Hirotsugu Shiroma
- , Satoshi Shiba
- , Tatsuhiro Shibata
- , Shinichi Yachida
- , Takuji Yamada
- , Jakob Wirbel
- , Petra Schrotz-King
- , Cornelia M. Ulrich
- , Hermann Brenner
- , Manimozhiyan Arumugam
- , Peer Bork
- , Georg Zeller
- , Francesca Cordero
- , Emmanuel Dias-Neto
- , João Carlos Setubal
- , Adrian Tett
- , Barbara Pardini
- , Maria Rescigno
- , Levi Waldron
- , Alessio Naccarati
- & Nicola Segata
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Amendments and Corrections |
Publisher Correction: Enterotypes in the landscape of gut microbial community composition
- Paul I. Costea
- , Falk Hildebrand
- , Manimozhiyan Arumugam
- , Fredrik Bäckhed
- , Martin J. Blaser
- , Frederic D. Bushman
- , Willem M. de Vos
- , S. Dusko Ehrlich
- , Claire M. Fraser
- , Masahira Hattori
- , Curtis Huttenhower
- , Ian B. Jeffery
- , Dan Knights
- , James D. Lewis
- , Ruth E. Ley
- , Howard Ochman
- , Paul W. O’Toole
- , Christopher Quince
- , David A. Relman
- , Fergus Shanahan
- , Shinichi Sunagawa
- , Jun Wang
- , George M. Weinstock
- , Gary D. Wu
- , Georg Zeller
- , Liping Zhao
- , Jeroen Raes
- , Rob Knight
- & Peer Bork
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Research |
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Correspondence |
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Research |
Metagenomic species profiling using universal phylogenetic marker genes
- Shinichi Sunagawa
- , Daniel R Mende
- , Georg Zeller
- , Fernando Izquierdo-Carrasco
- , Simon A Berger
- , Jens Roat Kultima
- , Luis Pedro Coelho
- , Manimozhiyan Arumugam
- , Julien Tap
- , Henrik Bjørn Nielsen
- , Simon Rasmussen
- , Søren Brunak
- , Oluf Pedersen
- , Francisco Guarner
- , Willem M de Vos
- , Jun Wang
- , Junhua Li
- , Joël Doré
- , S Dusko Ehrlich
- , Alexandros Stamatakis
- & Peer Bork
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Research |
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
- Jakob Wirbel
- , Paul Theodor Pyl
- , Ece Kartal
- , Konrad Zych
- , Alireza Kashani
- , Alessio Milanese
- , Jonas S. Fleck
- , Anita Y. Voigt
- , Albert Palleja
- , Ruby Ponnudurai
- , Shinichi Sunagawa
- , Luis Pedro Coelho
- , Petra Schrotz-King
- , Emily Vogtmann
- , Nina Habermann
- , Emma Niméus
- , Andrew M. Thomas
- , Paolo Manghi
- , Sara Gandini
- , Davide Serrano
- , Sayaka Mizutani
- , Hirotsugu Shiroma
- , Satoshi Shiba
- , Tatsuhiro Shibata
- , Shinichi Yachida
- , Takuji Yamada
- , Levi Waldron
- , Alessio Naccarati
- , Nicola Segata
- , Rashmi Sinha
- , Cornelia M. Ulrich
- , Hermann Brenner
- , Manimozhiyan Arumugam
- , Peer Bork
- & Georg Zeller
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Research |
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
- Andrew Maltez Thomas
- , Paolo Manghi
- , Francesco Asnicar
- , Edoardo Pasolli
- , Federica Armanini
- , Moreno Zolfo
- , Francesco Beghini
- , Serena Manara
- , Nicolai Karcher
- , Chiara Pozzi
- , Sara Gandini
- , Davide Serrano
- , Sonia Tarallo
- , Antonio Francavilla
- , Gaetano Gallo
- , Mario Trompetto
- , Giulio Ferrero
- , Sayaka Mizutani
- , Hirotsugu Shiroma
- , Satoshi Shiba
- , Tatsuhiro Shibata
- , Shinichi Yachida
- , Takuji Yamada
- , Jakob Wirbel
- , Petra Schrotz-King
- , Cornelia M. Ulrich
- , Hermann Brenner
- , Manimozhiyan Arumugam
- , Peer Bork
- , Georg Zeller
- , Francesca Cordero
- , Emmanuel Dias-Neto
- , João Carlos Setubal
- , Adrian Tett
- , Barbara Pardini
- , Maria Rescigno
- , Levi Waldron
- , Alessio Naccarati
- & Nicola Segata
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Research | | Open
Microbial abundance, activity and population genomic profiling with mOTUs2
- Alessio Milanese
- , Daniel R Mende
- , Lucas Paoli
- , Guillem Salazar
- , Hans-Joachim Ruscheweyh
- , Miguelangel Cuenca
- , Pascal Hingamp
- , Renato Alves
- , Paul I Costea
- , Luis Pedro Coelho
- , Thomas S. B. Schmidt
- , Alexandre Almeida
- , Alex L Mitchell
- , Robert D. Finn
- , Jaime Huerta-Cepas
- , Peer Bork
- , Georg Zeller
- & Shinichi Sunagawa
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Research |
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Research |
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Reviews |
Enterotypes in the landscape of gut microbial community composition
- Paul I. Costea
- , Falk Hildebrand
- , Manimozhiyan Arumugam
- , Fredrik Bäckhed
- , Martin J. Blaser
- , Frederic D. Bushman
- , Willem M. de Vos
- , S. Dusko Ehrlich
- , Claire M. Fraser
- , Masahira Hattori
- , Curtis Huttenhower
- , Ian B. Jeffery
- , Dan Knights
- , James D. Lewis
- , Ruth E. Ley
- , Howard Ochman
- , Paul W. O’Toole
- , Christopher Quince
- , David A. Relman
- , Fergus Shanahan
- , Shinichi Sunagawa
- , Jun Wang
- , George M. Weinstock
- , Gary D. Wu
- , Georg Zeller
- , Liping Zhao
- , Jeroen Raes
- , Rob Knight
- & Peer Bork
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Research |
Towards standards for human fecal sample processing in metagenomic studies
- Paul I Costea
- , Georg Zeller
- , Shinichi Sunagawa
- , Eric Pelletier
- , Adriana Alberti
- , Florence Levenez
- , Melanie Tramontano
- , Marja Driessen
- , Rajna Hercog
- , Ferris-Elias Jung
- , Jens Roat Kultima
- , Matthew R Hayward
- , Luis Pedro Coelho
- , Emma Allen-Vercoe
- , Laurie Bertrand
- , Michael Blaut
- , Jillian R M Brown
- , Thomas Carton
- , Stéphanie Cools-Portier
- , Michelle Daigneault
- , Muriel Derrien
- , Anne Druesne
- , Willem M de Vos
- , B Brett Finlay
- , Harry J Flint
- , Francisco Guarner
- , Masahira Hattori
- , Hans Heilig
- , Ruth Ann Luna
- , Johan van Hylckama Vlieg
- , Jana Junick
- , Ingeborg Klymiuk
- , Philippe Langella
- , Emmanuelle Le Chatelier
- , Volker Mai
- , Chaysavanh Manichanh
- , Jennifer C Martin
- , Clémentine Mery
- , Hidetoshi Morita
- , Paul W O'Toole
- , Céline Orvain
- , Kiran Raosaheb Patil
- , John Penders
- , Søren Persson
- , Nicolas Pons
- , Milena Popova
- , Anne Salonen
- , Delphine Saulnier
- , Karen P Scott
- , Bhagirath Singh
- , Kathleen Slezak
- , Patrick Veiga
- , James Versalovic
- , Liping Zhao
- , Erwin G Zoetendal
- , S Dusko Ehrlich
- , Joel Dore
- & Peer Bork
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Research | | Open
Assessment of transcript reconstruction methods for RNA-seq
- Tamara Steijger
- , Josep F Abril
- , Pär G Engström
- , Felix Kokocinski
- , Josep F Abril
- , Martin Akerman
- , Tyler Alioto
- , Giovanna Ambrosini
- , Stylianos E Antonarakis
- , Jonas Behr
- , Paul Bertone
- , Regina Bohnert
- , Philipp Bucher
- , Nicole Cloonan
- , Thomas Derrien
- , Sarah Djebali
- , Jiang Du
- , Sandrine Dudoit
- , Pär G Engström
- , Mark Gerstein
- , Thomas R Gingeras
- , David Gonzalez
- , Sean M Grimmond
- , Roderic Guigó
- , Lukas Habegger
- , Jennifer Harrow
- , Tim J Hubbard
- , Christian Iseli
- , Géraldine Jean
- , André Kahles
- , Felix Kokocinski
- , Julien Lagarde
- , Jing Leng
- , Gregory Lefebvre
- , Suzanna Lewis
- , Ali Mortazavi
- , Peter Niermann
- , Gunnar Rätsch
- , Alexandre Reymond
- , Paolo Ribeca
- , Hugues Richard
- , Jacques Rougemont
- , Joel Rozowsky
- , Michael Sammeth
- , Andrea Sboner
- , Marcel H Schulz
- , Steven M J Searle
- , Naryttza Diaz Solorzano
- , Victor Solovyev
- , Mario Stanke
- , Tamara Steijger
- , Brian J Stevenson
- , Heinz Stockinger
- , Armand Valsesia
- , David Weese
- , Simon White
- , Barbara J Wold
- , Jie Wu
- , Thomas D Wu
- , Georg Zeller
- , Daniel Zerbino
- , Michael Q Zhang
- , Tim J Hubbard
- , Roderic Guigó
- , Jennifer Harrow
- & Paul Bertone
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Research | | Open
Systematic evaluation of spliced alignment programs for RNA-seq data
- Pär G Engström
- , Tamara Steijger
- , Botond Sipos
- , Gregory R Grant
- , André Kahles
- , Tyler Alioto
- , Jonas Behr
- , Paul Bertone
- , Regina Bohnert
- , Davide Campagna
- , Carrie A Davis
- , Alexander Dobin
- , Pär G Engström
- , Thomas R Gingeras
- , Nick Goldman
- , Gregory R Grant
- , Roderic Guigó
- , Jennifer Harrow
- , Tim J Hubbard
- , Géraldine Jean
- , André Kahles
- , Peter Kosarev
- , Sheng Li
- , Jinze Liu
- , Christopher E Mason
- , Vladimir Molodtsov
- , Zemin Ning
- , Hannes Ponstingl
- , Jan F Prins
- , Gunnar Rätsch
- , Paolo Ribeca
- , Igor Seledtsov
- , Botond Sipos
- , Victor Solovyev
- , Tamara Steijger
- , Giorgio Valle
- , Nicola Vitulo
- , Kai Wang
- , Thomas D Wu
- , Georg Zeller
- , Gunnar Rätsch
- , Nick Goldman
- , Tim J Hubbard
- , Jennifer Harrow
- , Roderic Guigó
- & Paul Bertone
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Research |
Enterotypes of the human gut microbiome
- Manimozhiyan Arumugam
- , Jeroen Raes
- , Eric Pelletier
- , Denis Le Paslier
- , Takuji Yamada
- , Daniel R. Mende
- , Gabriel R. Fernandes
- , Julien Tap
- , Thomas Bruls
- , Jean-Michel Batto
- , Marcelo Bertalan
- , Natalia Borruel
- , Francesc Casellas
- , Leyden Fernandez
- , Laurent Gautier
- , Torben Hansen
- , Masahira Hattori
- , Tetsuya Hayashi
- , Michiel Kleerebezem
- , Ken Kurokawa
- , Marion Leclerc
- , Florence Levenez
- , Chaysavanh Manichanh
- , H. Bjørn Nielsen
- , Trine Nielsen
- , Nicolas Pons
- , Julie Poulain
- , Junjie Qin
- , Thomas Sicheritz-Ponten
- , Sebastian Tims
- , David Torrents
- , Edgardo Ugarte
- , Erwin G. Zoetendal
- , Jun Wang
- , Francisco Guarner
- , Oluf Pedersen
- , Willem M. de Vos
- , Søren Brunak
- , Joel Doré
- , María Antolín
- , François Artiguenave
- , Hervé M. Blottiere
- , Mathieu Almeida
- , Christian Brechot
- , Carlos Cara
- , Christian Chervaux
- , Antonella Cultrone
- , Christine Delorme
- , Gérard Denariaz
- , Rozenn Dervyn
- , Konrad U. Foerstner
- , Carsten Friss
- , Maarten van de Guchte
- , Eric Guedon
- , Florence Haimet
- , Wolfgang Huber
- , Johan van Hylckama-Vlieg
- , Alexandre Jamet
- , Catherine Juste
- , Ghalia Kaci
- , Jan Knol
- , Karsten Kristiansen
- , Omar Lakhdari
- , Severine Layec
- , Karine Le Roux
- , Emmanuelle Maguin
- , Alexandre Mérieux
- , Raquel Melo Minardi
- , Christine M'rini
- , Jean Muller
- , Raish Oozeer
- , Julian Parkhill
- , Pierre Renault
- , Maria Rescigno
- , Nicolas Sanchez
- , Shinichi Sunagawa
- , Antonio Torrejon
- , Keith Turner
- , Gaetana Vandemeulebrouck
- , Encarna Varela
- , Yohanan Winogradsky
- , Georg Zeller
- , Jean Weissenbach
- , S. Dusko Ehrlich
- & Peer Bork
